Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq46921 120 7e-23 seq28260 107 4e-19 seq37016 100 6e-17 seq28411 89.7 1e-13 >seq46921 Length=376 Score = 120 bits (132), Expect = 7e-23 Identities = 237/341 (70%), Gaps = 11/341 (3%) Strand=Plus/Minus Query 567 CCAAAACCGCCGGTGTTGTTTGGGATAATACCCATCAGTTGTGGTGGCACACGGTGAGCT 626 || ||||||||||||||||| ||||||| |||||||| || || || || || || | Sbjct 354 CCGAAACCGCCGGTGTTGTTGGGGATAACCCCCATCAGCTGCGGCGGTACGCGATGCACG 295 Query 627 GCTAACACATCATCACGGCTTACGTTTTTAATATTAAAAAATTCGTCTTTTGCCGATACA 686 || | || ||||| || ||||||||||| || ||||| || ||||| |||| || Sbjct 294 GCCAGCATGTCATCGCGTGACACGTTTTTAATGTTCAAAAACTCATCTTTAGCCGCCACC 235 Query 687 TCAGCAATCGGAATTATTTGAATGCCGTCTTTGTTACCACCTGGAGAATGTAC--AAATA 744 || | | ||| || || |||||||||||||| || | | | || ||||| ||| | Sbjct 234 TCTGACAGCGGGATGATCTGAATGCCGTCTTTTTT--CCCGTTCGGACTGTACATAAACA 177 Query 745 GATTTTTGAAATTCCCCACCCCTTTTGATTTCCGCAGTTGCTCT-CTGATATTATCCACA 803 | || ||| || || || |||| | || |||| || | ||| ||||| || Sbjct 176 GGTTGCGGAAGTTGCCAGGGCCCTTTGCGCTTTTCA-TTGCGCTGCGGATGTTATCAACG 118 Query 804 T-CTCCCTGTTTTGCGGAGTTTTCCGTCATATAAAACACAAAGCCGGCGTGAGCT--CCA 860 | || | | | |||| | || |||||||| | | ||| |||||||| ||| || Sbjct 117 TCCTGCTGGCTCTGCGCCG-GGTCGGTCATATACATGATAAAACCGGCGTG-GCTGCCCG 60 Query 861 TTTAAAAAATACTTACGGCGAAACAGAGTAGCACTCTCATT 901 || | ||||||| ||||||||||| || || |||||| Sbjct 59 TTAATGTAATACTTGCGGCGAAACAGCGTGGCCGACTCATT 19 >seq28260 Length=1223 Score = 107 bits (118), Expect = 4e-19 Identities = 213/310 (69%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 24452 AGATTA-ATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTG 24510 |||||| || ||| ||||| || || || ||||| ||||| || |||||| ||| Sbjct 751 AGATTACATCTGA-CTTAACTTTTTCTCGGATCAAATGTGTTTTT-ATTAAGTAACGTTT 694 Query 24511 CCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACA 24570 | ||||| | ||||||||||||||| | ||||| |||| | | |||||| | Sbjct 693 CTATCGGCCTCTGGCCACAGCACATTTTATCCTGATGGTTTCGCTTATTATTATAGTGAG 634 Query 24571 TTAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCGTATAAATTTTCTTCCTAA 24630 | ||| ||||| | ||||| ||||||||| | || ||| | ||| ||| Sbjct 633 CCAGCCATTCATCAAGATCCGATTGTAATGTTTCGAGTTCGCAATACAGTTT-TTCAGGT 575 Query 24631 ATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATGCCGTTAG 24690 | || || || ||||| || || || || || | |||||||||||||| || || || Sbjct 574 ACGCTACCTGATAAAACTCCTGCAATATCGTCATGTGGAACCGTTCGCATATACCATTCT 515 Query 24691 TCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTATTGCTAAATAAAGCT 24750 | |||| | | ||||| || |||| || |||| ||||||||| | |||||||| Sbjct 514 TTTGCGTCGACATCGCTTTGGTCTTCGTGTGGTCTATATGATTTATTGCCAGATAAAGCT 455 Query 24751 CATAATCGTG 24760 ||||| || Sbjct 454 GGTAATCATG 445 >seq37016 Length=582 Score = 100 bits (110), Expect = 6e-17 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 567 CCAAAACCGCCGGTGTTGTTTGGGATAATACCCATCAGTTGTGGTGGCACACGGTGAGCT 626 || || |||||||||||||| ||||| || ||||| | ||| || ||||| || || | Sbjct 306 CCGAATCCGCCGGTGTTGTTAGGGATGATCCCCATTAATTGCGGCGGCACGCGATGCACG 365 Query 627 GCTAACACATCATCACGGCTTACGTTTTTAATATTAAAAAATTCGTCTTTTGCCGATACA 686 || | || ||||| || |||||||| ||||| | ||| || ||||| |||| ||| Sbjct 366 GCCAGCATGTCATCGCGCGACACGTTTTTGATATTCAGAAACTCATCTTTGGCCGCTACC 425 Query 687 TCAGCAATCGGAATTATTTGAATGCCGTCTTTGTTACC 724 || | | || || |||||||| |||||||| || || Sbjct 426 TCTGACAGAGGGATGATTTGAATCCCGTCTTTCTTCCC 463 >seq28411 Length=1816 Score = 89.7 bits (98), Expect = 1e-13 Identities = 127/177 (72%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 2869 AATAGCGTTTTGTTCAGGCTTTTTGCGGTCGCCTTTATTTCGGCTTTTGATGTTCGGGTT 2928 |||| |||||| ||||||| |||||| |||| | || ||| ||| || || ||||| Sbjct 1755 AATA-CGTTTTTTTCAGGCGGTTTGCGCGGGCCTCTGTTGCGGTTTTCGACATTGGGGTT 1697 Query 2929 TAAATCCGCCTCATTGCCTCCGCCGTTAGCGTATTTCTTCACTCGAGCCACACGCTCAAG 2988 |||||||||||||||||| ||| |||| ||||| | || || ||||| Sbjct 1696 TAAATCCGCCTCATTGCCGCCGTTGTTA---AATTTCCCGATGCGCGCATGGCGCTCTGA 1640 Query 2989 CTGCCGACCAAGCAAATCAATCTCTTTATAGTCTGAACCTGTTTTTACCTCTTTCAT 3045 |||||| | |||| ||||| ||||| ||||| ||| || ||||||||||| Sbjct 1639 CTGCCGGGCCAGCAGGTCAATTTCTTTGTAGTCCTTTCCTTCCTTCACCTCTTTCAT 1583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114146306283600