Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq33108 190 2e-43 seq31280 116 4e-21 seq34305 105 7e-18 seq49234 102 9e-17 >seq33108 Length=3479 Score = 190 bits (210), Expect = 2e-43 Identities = 152/183 (83%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 131500 TTATAAGCTCTCAGTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 131559 |||||| || || ||||||||||| ||||| ||||| ||||| ||||| || ||||| || Sbjct 2968 TTATAAACTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGA 2909 Query 131560 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 131619 |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 2908 ATTAAAGCGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATG 2849 Query 131620 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 131679 || || || |||||||| |||||||| ||||| ||||||||||| | ||| || || || Sbjct 2848 TTTCACGGCGTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCC 2789 Query 131680 TTC 131682 ||| Sbjct 2788 TTC 2786 >seq31280 Length=10079 Score = 116 bits (128), Expect = 4e-21 Identities = 202/291 (69%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 43562 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTT 43621 || || || ||||| || ||||| ||||| | |||||| |||| ||||| ||| ||| Sbjct 1342 TTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTT 1401 Query 43622 TTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 43680 |||| || | || |||| ||||||| |||||| || ||||| | ||| || || || Sbjct 1402 TTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGC 1460 Query 43681 GCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 43740 ||||||||| | || || || || || ||||| || || ||||| || || || | || Sbjct 1461 GCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAA 1520 Query 43741 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAAT 43800 || ||| ||| |||||| ||||||| || |||| || || || || Sbjct 1521 CGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGAT 1580 Query 43801 CATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAAT 43851 ||| ||||||||||||| || || |||| || | |||| ||||| Sbjct 1581 ACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAAT 1631 >seq34305 Length=2218 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 131513 GTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 131572 ||||||||||| | ||| ||||| ||||||| || || || |||||||||||||| Sbjct 599 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCGAACG 658 Query 131573 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 131632 ||||| || || || |||||||| | ||| |||||||| || || | | | ||| || Sbjct 659 GCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGCGTCC 718 Query 131633 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 131685 || |||| || || |||||||| ||||| || || || |||||||| Sbjct 719 ATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAAT 771 >seq49234 Length=879 Score = 102 bits (112), Expect = 9e-17 Identities = 156/216 (72%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 133891 ATTGACGCTTTCGCAAAAATTCTAACTTATCGTAAAAGAACGTAACATGACCAGAACCTA 133950 |||| || ||| | ||| || ||| |||| || || || ||||||||||| | ||||| Sbjct 339 ATTGGCGTTTT-GTAAATATAATAATTTATTATAGAA-AATGTAACATGACCTGTACCTA 396 Query 133951 AAATAAACTCGGAAGATATTTTAAAATCTTTAACGCGCTTACC-GTTTGCCACATGCTTA 134009 || | | | | ||||||||||| || | || ||||| | ||| || |||||| Sbjct 397 AATGTAGGTAGTACTG-ATTTTAAAATCATTGATTCGTTTACCAGCTTG-TACGTGCTTA 454 Query 134010 CGAACTATACCAAAAACACGTGGCAATTCACGGTATTCTGCGATTAAATGTTGATCAGCA 134069 ||||| ||| || ||||||||||||||||||||||| || || | |||||| ||||| Sbjct 455 CGAACAGCACCGAATACACGTGGCAATTCACGGTATTCAGCCATAAGATGTTGGTCAGCT 514 Query 134070 AGTTCAGATACTAAAGTCAAATTAATACGAGTCATT 134105 | ||| |||| | ||| ||||| |||||| Sbjct 515 AATTCTTGTACTGGTACGAGATTGATACGGGTCATT 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534353851304000