Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028931.1 Length=55108 Score E Sequences producing significant alignments: (Bits) Value seq70435 356 8e-94 seq34472 93.3 1e-14 >seq70435 Length=537 Score = 356 bits (394), Expect = 8e-94 Identities = 336/426 (79%), Gaps = 2/426 (0%) Strand=Plus/Minus Query 21774 AAGGCGGGAGTCGCCTTCGAGGCCCTGCGCGAGTTCGCCGCGCAGACGCCCTACAGCCTG 21833 ||||| | || || |||| || |||| || | ||| ||| | ||||| ||||||||| Sbjct 513 AAGGCAGCTGTGGCTTTCGCTGCGCTGCAGGAAT-CGCGGCGAAAACGCCGTACAGCCTG 455 Query 21834 GACCAGGCGGTAGAGGGGTTCACTAAGCTGGTGAACCTCGGCCTGACGCCCTCCGAGCGC 21893 || ||||| || || || |||| |||||||||||||||||||||||||| |||||| Sbjct 454 GAGCAGGCCGTTGAAGGCTTCAGCAAGCTGGTGAACCTCGGCCTGACGCCATCCGAGAAG 395 Query 21894 GCGCTTACCTCCTACGGCAACACCGCCTCTGCCATGGGCAAGGACCTCAGCCAGATGGTC 21953 || || ||||||||||||||||||||| | || ||||| || ||||||| |||||| || Sbjct 394 GCTCTGACCTCCTACGGCAACACCGCCGCAGC-ATGGGGAAAGACCTCAATCAGATGATC 336 Query 21954 GAGGCGGTGGCCGACGCCACCACCGGCGAGTTCGAGCGCCTGAAGGAGTTCGGCATCAAG 22013 ||||| ||| |||| || |||||||||||||||||||||||||||| |||||||||| | Sbjct 335 GAGGCCGTGTCCGATGCTGCCACCGGCGAGTTCGAGCGCCTGAAGGAATTCGGCATCACG 276 Query 22014 GCCAAGCAGGAAGGCGACAAGGTCTCCCTCACGTTCCAGGGCGTCACCACGACGATCGGG 22073 | | ||| | ||||||||||| ||||| || |||| |||||||||||||| |||||| Sbjct 275 TCGAGCCAGCAGGGCGACAAGGTGTCCCTGACCTTCCGTGGCGTCACCACGACCATCGGG 216 Query 22074 AACAACGCGGCCGAGATTGAGGAGTACCTGACGAAGCTGGGCGAGAACCAGTTCGCCGGG 22133 || | ||| |||||||||| ||||| | ||| |||||| | | | |||||||| Sbjct 215 AAGAGCGCCAAGGAGATTGAGGGCTACCTCATGAACCTGGGCCTGGTCGATTTCGCCGGC 156 Query 22134 GCCATGCAGCAGCGCATGGACTCGCTGGACGGTGCCATCAGCAACCTGGGCGACACCTGG 22193 |||||| | |||||| | | |||||||| |||||| ||||||||||| || ||| Sbjct 155 GCCATGGATCAGCGCGCAAAGACACTGGACGGAGCCATCTCTAACCTGGGCGATACTTGG 96 Query 22194 GACCAG 22199 || ||| Sbjct 95 GATCAG 90 >seq34472 Length=3295 Score = 93.3 bits (102), Expect = 1e-14 Identities = 266/395 (67%), Gaps = 37/395 (9%) Strand=Plus/Minus Query 3888 CACCACCCCCTACAACTGCTACGTCTCGGGCACCATCGCCGACAGCTACGTCGACGGCGA 3947 ||||| | || ||||||| ||| |||||||||||| ||||| |||| | || Sbjct 3272 CACCAGCACCATCAACTGCACCGTGTCGGGCACCATCACCGAC-------TCGATG--GA 3222 Query 3948 GGGCTCGATCATGGAG-CGCGCCACCCAGGCAGCCGCGACCATGCGCATG---GGCGGCG 4003 ||| ||| ||||| | |||| || | ||| |||| | || | ||| ||| Sbjct 3221 CGGC---ATCCTGGAGAAGGTCCACGAAGCCGGCC-TGACC---CTCAAGGCCGGCTGCG 3169 Query 4004 GCATCGGCTACGACTTCTCCACCCTGCGCCCCAAGGGCGACCTGATCGT--CAAGCTGCA 4061 ||||||||||||| ||| ||| |||| ||| | ||| | | |||| | || | Sbjct 3168 GCATCGGCTACGAGTTCAGCACGCTGCCGCCC--GCGCGGCGCGTTCGTGGCCGGCGCCG 3111 Query 4062 G-TCCCGCAGCTCCGGCCCCATCTCCTTCATGGAGATTTTCGACGCGGTCTGCCGCTGCA 4120 | || || |||||| || || || |||||||| || |||||| | | ||| | | Sbjct 3110 GCGCCTACACCTCCGGGCCGATGTCGTTCATGGATATCTTCGACAAGATGTGCTTCACCG 3051 Query 4121 CGTCCTCGTCCGGCCACCGCCGTGGCGCCCAGATGGGCGTCAT--GCGCATCGACCACCC 4178 ||||||| ||||| |||||| ||||| ||||||||| | | || ||| ||||| Sbjct 3050 TGTCCTCGGCCGGCGGCCGCCGCGGCGCGCAGATGGGCACCTTCGACGTGTCG--CACCC 2993 Query 4179 CGACATCTTCGAGTTCATCCACGCCAAGC---AGAACGAGCACTTCCTGCGCGGCTTCAA 4235 ||| | || ||||||| |||||||| || ||| || ||||||| ||||| Sbjct 2992 GGACGTGAAGGACTTCATCCGCGCCAAGCGCGAGGACGGGC---GCCTGCGCCAGTTCAA 2936 Query 4236 TATCTCCATCGCCG-TCACCGACGAGTTCATGGAG 4269 | || | || | ||||||||| |||||| || Sbjct 2935 CCTGTCGCT-GCTGATCACCGACGGCTTCATGCAG 2902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175951326402000