Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028936.1 Length=59052 Score E Sequences producing significant alignments: (Bits) Value seq2902 158 5e-34 seq37656 84.2 8e-12 >seq2902 Length=689 Score = 158 bits (174), Expect = 5e-34 Identities = 302/438 (69%), Gaps = 29/438 (7%) Strand=Plus/Plus Query 53082 GCAGCTCGGCACGCTCGGCGGTGGCAATCACTTCATCGAGTTGTGTGTCGACCACCTTGA 53141 |||||| ||||| |||||| ||||| |||||| ||||| ||| |||| | || | Sbjct 191 GCAGCTGGGCACCCTCGGCTCGGGCAACCACTTCGTCGAGGTGTCCTCCGACGAGCTCGG 250 Query 53142 CCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAACAAGATCGCGCAGCG 53201 ||| |||||| ||||||| |||||||| ||||| || || || ||| || | |||||||| Sbjct 251 CCGGGTGTGGCTGTTCCTCCACTCCGGCTCGCGCGGGGTGGGGAACCAGCTGGCGCAGCG 310 Query 53202 GCATATCGCTGCGGCGCAGG-GCTACTGCCACAAC-----AACGGCCTGCAGGTGCCTCA 53255 ||| ||| | |||||||| || | ||| | ||| ||||| || | Sbjct 311 GCACATCCGGGTGGCGCAGGAGCAGGCGGCACGGCGGTTTTACGACCTGCCGG------A 364 Query 53256 CCCTGATCTGGCGTATCTCGTCGAGGGCACGCCCGAGTTCGACTCGTACATCGTCGAGTT 53315 || || || || || ||||| ||||| ||| ||||||||| | ||| ||| | | Sbjct 365 CCGCGACCTCGCCTACCTCGTGGAGGGGGAGCCGGAGTTCGACGCCTACGTCGAGGCCCT 424 Query 53316 GCGGTGGGCGCAGCGGTTCGCGTACCTGAACCGTGCCGAGATGCTGGATCGTTTCG-CGC 53374 | |||||||||||| ||||| ||| ||||| | |||||| |||| || ||| ||| Sbjct 425 CCTGTGGGCGCAGCGCTTCGCCGCCCTCAACCGCGAGGAGATGATGGACCGCGTCGTCGC 484 Query 53375 GGGCGTTCGC----GCACT--GGATGGGTTACCCGCCGGGTGACGCCGATTCGCTGCTGG 53428 ||| |||| || || | |||| | ||||| |||| || | ||| | Sbjct 485 -CGCGCTCGCCGAGGCCCTCGGCCTGGG---CGGGCCGGAGGACGTCG-TCCGC-----G 534 Query 53429 TGGAGACGATCAACACTCATCACAACTACACGCAGAAGGAAACTCACGGCGGCCGTGAGG 53488 |||||||||| | || ||||||||||| || || ||| ||| ||||||| Sbjct 535 AGGAGACGATCGGCTGCCACCACAACTACACCGCCCGCGAGACCCACTACGGGCGTGAGG 594 Query 53489 TGTGGTTGACCCGCAAGG 53506 ||||| || ||||||||| Sbjct 595 TGTGGCTGTCCCGCAAGG 612 >seq37656 Length=523 Score = 84.2 bits (92), Expect = 8e-12 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 53079 TGAGCAGCTCGGCACGCTCGGCGGTGGCAATCACTTCATCGAGTTGTGTGTCGACCACCT 53138 || |||||| |||||| | ||||||||||| |||||||||||| |||| ||||| | Sbjct 365 TGGGCAGCTGGGCACGTTGGGCGGTGGCAACCACTTCATCGAGCTGTGCCTCGACGAAGA 306 Query 53139 TGACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAACAAGATCG 53194 | || |||||| || | ||||||| ||| ||||| || || ||||| ||||| Sbjct 305 GGCGCGGGTGTGGGTGATGCTGCACT-CGGGTCGCGCGGCGTCGGCAATGCGATCG 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188552598080400