Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028940.1 Length=170286 Score E Sequences producing significant alignments: (Bits) Value seq49372 107 2e-18 seq66454 98.7 1e-15 seq49234 95.1 1e-14 >seq49372 Length=1062 Score = 107 bits (118), Expect = 2e-18 Identities = 203/295 (69%), Gaps = 13/295 (4%) Strand=Plus/Plus Query 66598 TTTTCCCATGCATATTCACGGAACCAGCCGGATGTGATGCTTGTACATACTTTTTCAAGA 66657 || ||||| | | |||| | ||||| || || || || || |||| ||||| | | | Sbjct 349 TTCTCCCAAGAAAATTCTCTAAACCATCCTGACGTAATACTACTACACACTTTAACTAAA 408 Query 66658 GCCATCAAAAAACTATGTTCTGA--ACTAACATTTTGGAAGTTGTTAGGAATCTGAGAAC 66715 || | | |||||| |||| | | || ||| || || ||||| || || |||| Sbjct 409 GCAGTAATAAAACT-----CTGACGAGGATCAATTTCAAAATTATTAGGGATTTGTGAAC 463 Query 66716 GTTCTAATGCTAGTACACATGTTTCTTCATATACCCCGGCTAATTTAATTTCTTCAGGAA 66775 |||||||||| || |||||||||||||||||||| || |||||||| ||| || Sbjct 464 GTTCTAATGCAAGAACACATGTTTCTTCATATACACCCAATAATTTAACTTCATCGCTCT 523 Query 66776 GAGAAAAGAATTTTTCTTTATCTGTTAAAACTTGGCTTCCATCTTTCA-TGTAAAATT-- 66832 | | |||||| ||||||||| ||| | ||| | | || ||| || || | || Sbjct 524 GTGCAAAGAACTTTTCTTTACTTGTCATAAC---GTCTGCACCTTCCACAATATAGTTCA 580 Query 66833 TATAAGCTGGTTGTTGAGTTAAAGCAACTGCTTCATGAATTGTATCATGGTCATA 66887 |||| || |||| | | || | ||||| ||||| |||||||||||||| Sbjct 581 TATATGCAGGTTTGTCAAGTACTTTTATCGCTTCGTGAATAGTATCATGGTCATA 635 >seq66454 Length=1623 Score = 98.7 bits (108), Expect = 1e-15 Identities = 78/93 (84%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 75459 TAACTATGAGGGCGTTTGGTGACCCTTGCCGGATTCGAACCAGCGACCGAGCAATTATGA 75518 ||| | || ||| |||||||| || ||| ||| |||||||||||||||||||||||||| Sbjct 1198 TAATTGTGTGGGTATTTGGTGATCCCTGCTGGACTCGAACCAGCGACCGAGCAATTATGA 1257 Query 75519 GTTGCCTGCTCTA--CCTCTGAGCTAAAGGGCC 75549 ||||||||||||| | ||||||||| || || Sbjct 1258 GTTGCCTGCTCTAACCAACTGAGCTAAGGGACC 1290 >seq49234 Length=879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 62828 TTTACCTTCCTGTACTCGCTTACGAACTGCGCCAAAAACACGTGGTAATTCACGGTATTC 62887 |||||| | ||||| |||||||||| || || || |||||||| |||||||||||||| Sbjct 433 TTTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAATTCACGGTATTC 492 Query 62888 AGCCATTAGATGTTGGTCTGCAAGTTC 62914 |||||| ||||||||||| || | ||| Sbjct 493 AGCCATAAGATGTTGGTCAGCTAATTC 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543899877848000