Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq28361 93.3 6e-14 >seq28361 Length=3781 Score = 93.3 bits (102), Expect = 6e-14 Identities = 214/316 (68%), Gaps = 10/316 (3%) Strand=Plus/Plus Query 181320 ATCATCAGTGTCGGCAAAGCCAACGGTTCGCG-GTCAAGCTGTTCCTTCACCTGATCGAA 181378 |||| ||| |||| || || ||||||||| |||| | || | |||| || | Sbjct 2038 ATCACCAGCTTCGGTAACGCACGCGGTTCGCGCGTCA-GTTGCAGGCGCGCCTGCTCCAG 2096 Query 181379 GTGATTGTTGTAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGACTTCAAGACC 181438 ||| ||| |||| | ||| ||||| || | | | || | || ||||| || ||| | Sbjct 2097 GTGGTTGCTGTAAAGGTGCGTATCGCCGCCGGTCCAGACAAAGTCACCGACCTCCAGATC 2156 Query 181439 ACATTCCAGCGCGATCAGATGTGTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCC 181498 || | |||||| || ||| ||| ||||| || ||||||||| || || ||||| Sbjct 2157 GCACTGTTGCGCGACCATATGCACCAGCAGCGCATAGCTGGCGATGTTAAACGGCAGCCC 2216 Query 181499 CAAGAAGACGTCCACGGACCGCTGATTCCAAAGG---CAGGACAGTTTGTCATT-GCGAA 181554 || ||| | ||| ||| ||||| | |||| ||||| || || ||| |||| Sbjct 2217 CAGGAAAATGTCGCAGGAACGCTGGT---AAAGCTGACAGGAGAGCCTGCCATCCGCGA- 2272 Query 181555 CATAGAACTGGAATCCGTAGTGGCACGGCGGCAAAGCCATTAGATCGACCGCGCCGACAT 181614 | ||||||||||| | |||||||| | || |||||| ||| | |||| || | Sbjct 2273 CGTAGAACTGGAAAAAGGCATGGCACGGAGCCAGCGCCATTTCATCCAGTTCGCCCACGT 2332 Query 181615 TCCAAGCCGAGACCAT 181630 |||| |||||||| || Sbjct 2333 TCCACGCCGAGACAAT 2348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 660276420324000