Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028953.1 Length=110764 Score E Sequences producing significant alignments: (Bits) Value seq73449 150 1e-31 seq128899 91.5 1e-13 seq81331 91.5 1e-13 seq61695 82.4 5e-11 >seq73449 Length=503 Score = 150 bits (166), Expect = 1e-31 Identities = 219/302 (73%), Gaps = 7/302 (2%) Strand=Plus/Plus Query 97228 CGCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTC 97287 |||||||| |||||||| | ||||||||| || ||||| | || || ||| || Sbjct 129 CGCCCCCATCGGCAGGAAGAGTCCGTCACCCTGACCGATGAGACGATCCGCGCCGGGCTG 188 Query 97288 GTCCAGGATCACCCGGCTATCGGTGAGTGATGCTGTG-GCGAACGAGAGCCTAGACGGCA 97346 || ||||| || ||| ||||||| | || | ||||||| ||| | || |||| Sbjct 189 ATCGAGGATGACGCGGGAGTCGGTGAC-GCTGGTCACCGCGAACGCGAGTCGCGAGGGCA 247 Query 97347 CGTTGGAT-TTGATAAGGCCTGT-GACTACATCCACGGAGGGCCGCTGCGTCGCCAGGAC 97404 |||||| ||||| ||||| || ||| || || |||||||| ||||| ||||| ||||| Sbjct 248 CGTTGGCCCTTGATCAGGCCCGTCGACGACGTCGACGGAGGGACGCTGGGTCGCGAGGAC 307 Query 97405 GAGATGAATACCGGCTG-CGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTT 97463 ||| || || | |||| | || || ||||| ||||||||| || | ||||||| | Sbjct 308 GAGGTGGATGGCCGCTGGCTCGGGCGAGCTGGGTGATGCGGACGATCGAGTCCTCGACGT 367 Query 97464 CTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGG 97523 | | | || |||||||||||||| ||||| |||||||| || |||| | ||||| Sbjct 368 CGCGC--GGCGCGACCCATCATGAGGTCGGCGAGCTCGTCGACGACGACCAGCAGGTAGG 425 Query 97524 GG 97525 || Sbjct 426 GG 427 >seq128899 Length=508 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 97342 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97401 ||| | ||| | ||||| ||| |||| || || || ||||| ||||||||||||| Sbjct 486 CGGGAAGTTCGCCTTGATCGTGCCGGTGATGACGTCGACCGAGGGGCGCTGCGTCGCCAT 427 Query 97402 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97461 || || || || ||||| ||||||||| ||||||||| ||| | || | |||| Sbjct 426 GATGACGTGGATGCCGGCGGCGCGCGCCATCTGGGCGAGGCGCTGGACCGTGCCTTCGAT 367 Query 97462 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTA 97521 || |||| | | ||||||| ||||| || | ||||||| | || |||||||| Sbjct 366 GTC---CTTGCCGGCCACCATCATCAGGTCGGCCATCTCGTCGATGATGACGACGATGTA 310 Query 97522 GGGGAG 97527 ||| || Sbjct 309 GGGCAG 304 >seq81331 Length=977 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 97342 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97401 ||| | ||| | ||||| ||| |||| || || || ||||| ||||||||||||| Sbjct 23 CGGGAAGTTCGCCTTGATCGTGCCGGTGATGACGTCGACCGAGGGGCGCTGCGTCGCCAT 82 Query 97402 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97461 || || || || ||||| ||||||||| ||||||||| ||| | || | |||| Sbjct 83 GATGACGTGGATGCCGGCGGCGCGCGCCATCTGGGCGAGGCGCTGGACCGTGCCTTCGAT 142 Query 97462 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTA 97521 || |||| | | ||||||| ||||| || | ||||||| | || |||||||| Sbjct 143 GTC---CTTGCCGGCCACCATCATCAGGTCGGCCATCTCGTCGATGATGACGACGATGTA 199 Query 97522 GGGGAG 97527 ||| || Sbjct 200 GGGCAG 205 >seq61695 Length=1195 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 97616 ACCGCCTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTACGGG 97675 ||||||| | ||| |||||||| || || | || || ||||| |||| || Sbjct 1093 ACCGCCTTCTTGGGATCGGTGACGACGGGGGTGAGCAGATGCGGGATGCCGTCATAGACC 1034 Query 97676 GTGAGTTCCACCATCTTCGGGTCGATCATGATGAGTTTGACCCGATCAGGATTGGCTCGG 97735 | || |||| |||||| || |||| |||||| || | | | || || || ||| Sbjct 1033 GACAGCTCCAGCATCTTGGGATCGACCATGATCAGCCGGCACTGCTCCGGGGTGAGCCGG 974 Query 97736 TAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTACCTGATCCGGTGGCGCCA 97795 ||||| || || | | ||||| |||||| | ||||| || || ||||| | ||| Sbjct 973 TAGAGGATCGACAGGATCATCGTGTTGATCGCGACCGACTTGCCCGAGCCGGTCGTGCCC 914 Query 97796 GCCACCAGCAGGTGCGGCAT 97815 || ||||||||||||||||| Sbjct 913 GCGACCAGCAGGTGCGGCAT 894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353757328767500