Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq28260 125 2e-24 >seq28260 Length=1223 Score = 125 bits (138), Expect = 2e-24 Identities = 217/310 (70%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 40719 AGATTA-ATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTG 40777 |||||| || ||| ||||| || || || ||||| ||||| || |||||| ||| Sbjct 751 AGATTACATCTGA-CTTAACTTTTTCTCGGATCAAATGTGTTTTT-ATTAAGTAACGTTT 694 Query 40778 CCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACA 40837 | ||||| | ||||||||||||||| | ||||| |||| | | |||||| | Sbjct 693 CTATCGGCCTCTGGCCACAGCACATTTTATCCTGATGGTTTCGCTTATTATTATAGTGAG 634 Query 40838 TTAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCGTATAAATTTTCTTCCTAA 40897 | ||| ||||| | ||||| ||||||||| | || ||| | ||| ||| Sbjct 633 CCAGCCATTCATCAAGATCCGATTGTAATGTTTCGAGTTCGCAATACAGTTT-TTCAGGT 575 Query 40898 ATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCG 40957 | || || || ||||| || || || || || | |||||||||||||| ||||||||| Sbjct 574 ACGCTACCTGATAAAACTCCTGCAATATCGTCATGTGGAACCGTTCGCATATACCATTCT 515 Query 40958 TCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAGCT 41017 | || | | || |||| || ||||| || ||||| | |||||| || | |||||||| Sbjct 514 TTTGCGTCGACATCGCTTTGGTCTTCGTGTGGTCTATATGATTTATTGCCAGATAAAGCT 455 Query 41018 CATAATCGTG 41027 ||||| || Sbjct 454 GGTAATCATG 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166465227108600