Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028957.1 Length=171541 Score E Sequences producing significant alignments: (Bits) Value seq31280 129 6e-25 seq49234 93.3 5e-14 >seq31280 Length=10079 Score = 129 bits (142), Expect = 6e-25 Identities = 308/460 (67%), Gaps = 12/460 (3%) Strand=Plus/Plus Query 142788 GGACTAAACAGAGTGATGTAATCATTCTTAGCCAGACGTTCCATCATCAAGTTATTCAAC 142847 || |||||||| ||||||| || ||| ||| || | ||||| || || | | Sbjct 1288 GGGCTAAACAGCGTGATGTCCTCGCCCTTCAGCAGGCGCTGGTACATCATTTTGTTGAGC 1347 Query 142848 TGGACGCCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTGTTCTTCAGA 142907 || || || |||||||| || | | |||||| |||| || || |||||| ||||| Sbjct 1348 TGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTTTTCAGG 1407 Query 142908 ACGAGCAAATTTTCAACTTCCAAATGCCATAAAGGATAATA-AGCAGTAGCAGCGCCGCC 142966 || | || |||| ||||||| |||||| | ||||| | ||| || || |||||||| Sbjct 1408 ACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGCGCCGCC 1466 Query 142967 CCGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAAT 143026 |||| || || || ||||||||||| || || || ||||| || || ||||||| || Sbjct 1467 ACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAACGGGAT 1526 Query 143027 AACACCAGTATGACGAACTTCACCCATACCGATTTTCG---AACCTTCAGCACGAATCAT 143083 | ||| ||||| | ||||||| ||| ||| || || || || Sbjct 1527 ACAACCGGTATGGAAAGCTTCACC---GCCGCGAATCGGGCTGCCCAGCGCGCGGATACG 1583 Query 143084 ACCAACGTTGATGCCGATACCCGCACGCTTACTGATA--TATTCGATGATTGAATTGGCA 143141 ||| |||| || || ||||| | ||| | ||| | |||| | || | ||| Sbjct 1584 ACCCGCGTTAATACCAATACCTG--CGCGTTGTGAAACGTATTTCACAATAGCGCTGGAG 1641 Query 143142 GTCTTATTGATTGACTTCAGGGAGTCTGCAGCTTCGATAACCACGCAGGAACTGAACTGC 143201 ||| ||||| || | |||| ||| || ||| || | || ||||| |||||||| Sbjct 1642 GTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACTGA 1701 Query 143202 CGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGTGGGCA 143241 ||||| || || | | |||| |||||| || || |||| Sbjct 1702 CGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCA 1741 >seq49234 Length=879 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 57330 TTATCATAAAAGAAGGTGACATGACCAGTTCCTAAAAGAAAAGATGATGGGATTTTAAAG 57389 |||| ||| || || || |||||||| || |||||| | | | | | |||||||| Sbjct 364 TTATTATAGAA-AATGTAACATGACCTGTACCTAAATGTAGGTAGTACTG-ATTTTAAAA 421 Query 57390 TCAGACACCTTTTTACCATTTTGCACATGCTTACGAACAGCACCAAACACGCGAGGAAGC 57449 ||| | ||||||| ||| || ||||||||||||||||| || || || || | Sbjct 422 TCATTGATTCGTTTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAAT 481 Query 57450 TCACGATATTCAGCCATAAGGTGTTGGTCGGCAAGTTC 57487 ||||| |||||||||||||| |||||||| || | ||| Sbjct 482 TCACGGTATTCAGCCATAAGATGTTGGTCAGCTAATTC 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547909336788000