Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq32038 242 1e-59 seq8276 183 1e-41 seq102312 141 3e-29 seq73294 138 4e-28 seq73638 107 6e-19 seq36676 100 9e-17 seq35373 100 9e-17 seq35294 95.1 4e-15 >seq32038 Length=828 Score = 242 bits (268), Expect = 1e-59 Identities = 338/466 (73%), Gaps = 16/466 (3%) Strand=Plus/Minus Query 38206 GGCGGTCAGTCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGAC 38265 ||||||||| ||||||||||| || | | || |||||||| | |||| | Sbjct 460 GGCGGTCAGGCCGAAGCGGATGTCG-GTGCGACGGC--GGGTGAAGTTCGCACTCGACTC 404 Query 38266 CGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGC 38325 ||||| ||||| || ||| | ||||||||| | ||||||| ||||||| || Sbjct 403 GTTGACGTCCGGCGGGAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGCGC 344 Query 38326 CATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTA 38385 | ||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||||| Sbjct 343 CGACTTGTCCTTGTCGTCGCGCACCGAGGTGAGGACGGCGGCCATGTACTCGGCCGGGTA 284 Query 38386 GTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTT 38445 || | ||| ||||| || || | ||| | ||||| ||||| ||||| ||||||| ||| Sbjct 283 GTTGGCCTTGAGGTAGGCGGTCCAGTACGTGATGACGCCGTAGGCCGCGGAGTGCGACTT 224 Query 38446 GTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCGTC 38505 |||||| ||||| ||| ||| || | ||| | ||||||| | ||| || || | Sbjct 223 GTTGAACGCGTAGTCGGAGAACGGGAGGAGGATCTCCCACAGCTTGTCGATCGCGGCCTG 164 Query 38506 CGAGTAGCCTCGCTC--GCTTGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACC 38563 || | || | ||||| || || || ||||||| || ||| |||| | ||| || Sbjct 163 CGGGAAGTCGCGCTCGAGCATG--CCGGCCTGGAAGCCGGCGTACTGCTTGTCGAGCTCC 106 Query 38564 TCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGC--CTG-ACCGAGGGTGTAC 38620 || ||||||||||||||| ||||| || || |||||| | | ||||||||| || Sbjct 105 TCCTTCTTCTTCTTGCCCATCGCGCGGCGCAGGTTGTCGGCGGCGGCGCCGAGGGTGAAC 46 Query 38621 CCGGCCAGGATCTGCGC---CGCCTTCTGCACCTGCTCCTGGTAGA 38663 || || || | |||||| ||| | |||||||||||||||| Sbjct 45 CCCGCGAGCACCTGCGCGATGGCCAT---GACCTGCTCCTGGTAGA 3 >seq8276 Length=3740 Score = 183 bits (202), Expect = 1e-41 Identities = 277/390 (71%), Gaps = 12/390 (3%) Strand=Plus/Plus Query 39375 AGGGCTTGTCCAGCACGCGGGCCGCGTC---CTTCATCGCGTTGCGGGCCTTGATCCTGC 39431 ||| |||| || |||| || ||| |||| | || ||| ||| |||| || | || Sbjct 521 AGGACTTGCCCTGCACCCGCGCCACGTCGCGCACCACCGCCTTGGCGGCCATGGT---GC 577 Query 39432 CGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCA 39491 || | || |||||| ||| |||| ||||||| |||| ||||| ||||| Sbjct 578 CGAAGGTGATGATCTGGCTCACCGCCTCGCGGCCGTACAGGTCGGCCACGTATTCGATCA 637 Query 39492 CGTCGCCACGGCGACGGTC-ATC--GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCT 39548 | | | ||||| ||| || |||||||| ||| | |||||||||||||| || | Sbjct 638 CCCGGTC---GCGACCGTCCATGCAGAAGTCGACGTCGAAGTCGGGCATGGAGATCCGTT 694 Query 39549 CAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCC 39608 | ||||| ||||| |||||||| | || | | | | || || |||||||||||| Sbjct 695 CGGGGTTGAGGAAGCGCTCGAACAGCAGGTCATAGGCCAGCGGATCGAGGTCGGTGATCT 754 Query 39609 CGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACAC 39668 ||| |||| ||| |||| ||||| || | ||||| || || ||||||||| ||| | Sbjct 755 TGAGTACGTAGGCGACCAGGGAGCCGGCACCCGAGCCCCGGCCGGGGCCGACCGGCACGC 814 Query 39669 CGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCA 39728 |||| | ||||||||| ||||||||| |||| ||||||||| ||||| |||| Sbjct 815 CGTTGTTCTTCGCCCACTTGATGAAGTCCATCACGATGAGGAAGTAACCGGGGAAGCCCA 874 Query 39729 TCTGGTTGATCATGTCGATCTCGTAGTCGA 39758 ||||| |||| ||||||| |||| ||| || Sbjct 875 TCTGGATGATGATGTCGAGCTCGAAGTTGA 904 >seq102312 Length=400 Score = 141 bits (156), Expect = 3e-29 Identities = 275/397 (69%), Gaps = 17/397 (4%) Strand=Plus/Minus Query 40267 GGCCTCCTCGTACTGACCGAGGTTGAGCCGGGTCATCACAGCACCACCG--GGGCATCCC 40324 |||||| |||||||| || ||| ||||| ||| ||| | || ||| ||||| ||| Sbjct 390 GGCCTCGTCGTACTGGCCCAGGCGCAGCCGCGTCTGCAC--CTCCCCCGACGGGCAGCCC 333 Query 40325 GTGGTGCCGATCAGGCCCTCTGCGTGCTCGGCCACCAGCTCGGCGTCCATGCGCGGGTAC 40384 |||||| |||| ||||| | || || | | ||||||| ||||||||| || | Sbjct 332 GTGGTGGCGATGAGGCCGGAGGAGTACTGCGAGAGCAGCTCGCGGTCCATGCGGGG---C 276 Query 40385 TTCCCGAGCAGACCCTCGCTGTACGAGCGAGA--GGAGAGCTTGAACAGGTTGTGCAGGC 40442 || ||| | |||||| | | || || | | ||||||||||||||||| || Sbjct 275 TTGTAGAGGAAGCCCTCGAGG--CTGGCCAGGCTGCTCATCTTGAACAGGTTGTGCATGC 218 Query 40443 CGGTCTTGTTCGTCGCGAGCATGGTCATGTGGGTGTAGGCACCCCGACCGCTCACGTCGT 40502 ||||| ||||| || ||||| |||||||||||||| | || ||| ||||||| Sbjct 217 CGGTCGTGTTCTCGGCCAGCATCGTCATGTGGGTGTACGAGCCGGCACCCGAGACGTCGT 158 Query 40503 -ACCGCTTCTGC--TCGGGCGTGCCCCACTGGACCCGCTCCTGGTC--GGAGCG-CGAGC 40556 ||| | || | ||| |||||||| || ||| || ||| || ||| || || Sbjct 157 CGCCGGAGCGGCCGTTGGGGTCGCCCCACTTCACGCGCGTCTTGTCCTGGCGCGCCGTGC 98 Query 40557 CCGGCGCGACGTACGCCTCGATCCCGATGATGGGCTTGACCCCAGCGGCCTGCCCCTGCG 40616 |||||| | ||||||||||| |||||||| ||||||||||| || | || | Sbjct 97 CCGGCGTCAGGTACGCCTCGACGCCGATGATCGGCTTGACCCCGTGCTTCTTCGCCGTCT 38 Query 40617 TGAAGAAGTCGTACGCACCGTGCAGGTTGCCGTGGTC 40653 | |||||||||| || ||| | | ||||||||| Sbjct 37 TCCAGAAGTCGTAGGCGCCGAAGACGAAGCCGTGGTC 1 >seq73294 Length=656 Score = 138 bits (152), Expect = 4e-28 Identities = 205/285 (72%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 39442 GATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTG-ACGTACCGGATCACGTCGCCAC 39500 |||||| || |||| |||| || || || || || || || |||||||| || | | Sbjct 158 GATCTGCGCCACCTGTTCGCGCCCATATTTG-CGCTGCACATAGCGGATCACCTCTTCGC 216 Query 39501 GGCGA--CGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAG 39558 ||||| | | || ||||||||| || | ||||||||| || ||||| || ||||| || Sbjct 217 GGCGATCCTGGCA--GAAGTCGATATCGAAGTCGGGCATCGACACGCGTTCCGGGTTGAG 274 Query 39559 GAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTA 39618 ||| || ||||||| ||| | | | || || | ||||| ||| || ||||| Sbjct 275 GAAGCGTTCGAAGAGCAGCGAGAAGCGTAGCGGATCGACATCGGTAATCGTCAGCGCGTA 334 Query 39619 CGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTT 39678 ||| ||||||| || || | || ||||| |||||||||||| | | | | || ||| Sbjct 335 GGCGACCAGCGATCCCGCACCCGAACCACGACCAGGGCCGACCGGAATATCATGCTGCTT 394 Query 39679 CGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAA 39723 ||||| |||||||||||| |||| |||||||| | |||||| Sbjct 395 TGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTA-GCCGGGAA 438 >seq73638 Length=482 Score = 107 bits (118), Expect = 6e-19 Identities = 160/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 39541 GACGCGCT-CAGGGTTCAGGAACCGCTCGAAGATG-AGCCCGTGAGGGATGGGGTCCAGG 39598 ||| |||| | ||||| ||||| |||||||| | | || || || | ||||||||| Sbjct 3 GACACGCTTCGGGGTTGAGGAAGCGCTCGAACACGCAGGTTGTACGGCAGCGGGTCCAGG 62 Query 39599 TCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAG-AGCCACGCCCAGGGCC 39657 ||||||||| || || |||| |||||||||| | ||| | |||| || || ||||| Sbjct 63 TCGGTGATCTGCAGCGCCCACGCCACCAGCGAGCCCGGCGCCGGAGCCGCGGCCCGGGCC 122 Query 39658 GACCCAC-ACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACG 39716 || | | || | | ||| |||| |||||||||||| |||| |||||||| Sbjct 123 GATCGGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCCACGATCAGGAAGTAGC 182 Query 39717 ACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGA 39758 ||||| ||||||| | ||||| |||| | |||| | |||| Sbjct 183 CGGGGAAGCCCATCTTGATGATCGTGTCCAGCTCGAACTCGA 224 >seq36676 Length=975 Score = 100 bits (110), Expect = 9e-17 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 ||| |||| ||| | ||||||||||| ||||| |||||||| || || || ||||| | Sbjct 606 GAAATCGACGTCGAAATCGGGCATGGAAACGCGTTCAGGGTTAAGAAAACGTTCGAACAG 665 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 || || | ||| || || ||||| || ||| || || || ||||||| || Sbjct 666 CAGGTCGAACTCAAGGGGATCGAGATCGGTAATTTTGAGCGCATAGGCCACCAGCGAACC 725 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 ||| | || || || || || || ||| || ||||| || |||| ||| ||| || Sbjct 726 GGCCCCCGAACCGCGTCCCGGCCCTACCGGTACGCCGTTATCTTTCGACCACTGGATAAA 785 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGAT 39738 || |||| |||||||| ||||| |||||||||||||| Sbjct 786 CTCCATTACGATCAGGAAGTAGCCGGGGAATCCCATCTGGTTGAT 830 >seq35373 Length=484 Score = 100 bits (110), Expect = 9e-17 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 40101 GCGTGTAGTGCGAGTCGTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGGT 40160 ||||||||||| |||||| ||| | || | | || |||||| || || ||| Sbjct 8 GCGTGTAGTGCAGGTCGTTCGTGCCGACGAGCGGGATGCCGAGGTCCTTCGAGATCCGGA 67 Query 40161 AGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGA 40220 || ||| ||| ||| || ||||||||||| || ||||||||||||||||| |||| Sbjct 68 CGACGTCCTCGATGACCCGGCGCTCGATCTCGAGCCCGTGGTCCATGATCTCGGCGAAGT 127 Query 40221 AGTTGTCCTTCCCGAAGATCTCCCG 40245 |||||||||| |||||||| || || Sbjct 128 AGTTGTCCTTACCGAAGATGTCGCG 152 >seq35294 Length=305 Score = 95.1 bits (104), Expect = 4e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38552 TTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCG 38611 ||||||| | | || ||||||||||| |||||||||||||| || | ||| ||| || Sbjct 277 TTGGCCATCTCTTCAGGCTTCTTCTTACCCATGGCGCGACGCAGCATGTCCGCCCCGCCC 218 Query 38612 AGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGC 38671 || || || |||| ||||| ||| || || | ||||| |||||||| | ||| | Sbjct 217 AGCGTATAGCCGGACAGGACCTGGGCAATCTGCATGACCTGTTCCTGGTACAGGATAATG 158 Query 38672 CCGAAGGTCGGGTCCAG 38688 ||| ||||||| ||||| Sbjct 157 CCGTAGGTCGGCTCCAG 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159992058645000