Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq37656 102 3e-17 seq67724 91.5 6e-14 >seq37656 Length=523 Score = 102 bits (112), Expect = 3e-17 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 55276 GCAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGA 55335 |||||| |||||| ||||||| ||||| |||||||||||||||||||||||| | | Sbjct 362 GCAGCTGGGCACGTTGGGCGGTGGCAACCACTTCATCGAGCTGTGCCTCGACGAAGAGGC 303 Query 55336 CCGGGTGTGGTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGATCG 55388 ||||||||| || | |||||||| || || || |||||||| || ||||| Sbjct 302 GCGGGTGTGGGTGATGCTGCACTC-GGGTCGCGCGGCGTCGGCAATGCGATCG 251 >seq67724 Length=1524 Score = 91.5 bits (100), Expect = 6e-14 Identities = 131/178 (74%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 54907 GCAGGCGCAGCAGATCGCCGATCTGCCTTTCGTCTATCCGCATG-TGGCGCTGATGCCCG 54965 |||| |||| | |||||| | ||||| ||| || ||| || | | ||| ||||||| | Sbjct 1331 GCAGCTGCAGAACATCGCCAAGCTGCCCTTCATCCATC-GCTGGATCGCGGTGATGCC-G 1388 Query 54966 ATGCGCATTTCGGCAAGGGCAGCAGTGTCGGCACGGTGATCCCGACCGAGGGCGCCGTCA 55025 | ||| | ||||||||| | |||||| ||||| | |||||| ||||| || Sbjct 1389 TCGTGCACCTGGGCAAGGGCGCGACCGTCGGCTCGGTGGTGCCGACCATCGGCGCGATCG 1448 Query 55026 TTCCCGCCGCGGTGGGTGTCGATAT-TGGCTGCGGCATGATCG-CGGCCCGCACCACG 55081 | || |||||||||||||| || || |||||||| ||||||| | || |||||| || Sbjct 1449 TGCCTGCCGCGGTGGGTGTGGACATCGGGCTGCGGGATGATCGCCCGCGCGCACCTCG 1506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193527288750600