Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_028999.1 Length=309208 Score E Sequences producing significant alignments: (Bits) Value seq15114 107 4e-18 seq69871 98.7 2e-15 seq6287 98.7 2e-15 seq39598 86.0 1e-11 >seq15114 Length=3758 Score = 107 bits (118), Expect = 4e-18 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 294856 GAATATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCT 294915 ||| ||||||||| || ||| ||||||||| |||||||||||||||||||||||||| Sbjct 3518 GAAGATGGTGCCGGCACCAGGAGTCGAACCCGG-GACCTACTGATTACAAGTCAGTTGCT 3576 Query 294916 CTACCAGCTGAGCTATAACGGCAA 294939 ||||||||||||||||| |||||| Sbjct 3577 CTACCAGCTGAGCTATACCGGCAA 3600 >seq69871 Length=949 Score = 98.7 bits (108), Expect = 2e-15 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 294661 TGGCGGAAGCGCAGAGATTCGAACTCTAGGGGCCCTTTGGACCCGTCTGATTTCAAGTCA 294720 ||||||||||||||||||||||||||| ||| ||||| || || | | ||||||| | Sbjct 104 TGGCGGAAGCGCAGAGATTCGAACTCT-GGGACCCTTGCGAGTCGGCGGTTTTCAAGACC 46 Query 294721 GGTGCCTTAAACCACTCGGCCACGCTTCC 294749 | ||||||||||||||||||||| ||||| Sbjct 45 GCTGCCTTAAACCACTCGGCCACACTTCC 17 >seq6287 Length=2255 Score = 98.7 bits (108), Expect = 2e-15 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 294661 TGGCGGAAGCGCAGAGATTCGAACTCTAGGGGCCCTTTGGACCCGTCTGATTTCAAGTCA 294720 ||||||||||||||||||||||||||| ||| ||||| || || | | ||||||| | Sbjct 1450 TGGCGGAAGCGCAGAGATTCGAACTCT-GGGACCCTTGCGAGTCGGCGGTTTTCAAGACC 1392 Query 294721 GGTGCCTTAAACCACTCGGCCACGCTTCC 294749 | ||||||||||||||||||||| ||||| Sbjct 1391 GCTGCCTTAAACCACTCGGCCACACTTCC 1363 >seq39598 Length=301 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/73 (89%), Gaps = 3/73 (4%) Strand=Plus/Minus Query 294857 AATATGGTGCCGTCAGAG-GGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCT 294915 || ||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| Sbjct 71 AAAATGGTGCCGGC-GAGAGGATTTGAACCCC-CGACCTACTGATTACAAGTCAGTTGCT 14 Query 294916 CTACCAGCTGAGC 294928 |||||| |||||| Sbjct 13 CTACCAACTGAGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 987682737135900