Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_029000.1 Length=162327 Score E Sequences producing significant alignments: (Bits) Value seq33499 176 5e-39 >seq33499 Length=26748 Score = 176 bits (194), Expect = 5e-39 Identities = 282/399 (71%), Gaps = 6/399 (2%) Strand=Plus/Minus Query 54361 TCCATAAGCATTTGACCATCATAGCCAGCGCCGACCACAGTCTGTGGTACACCACCTTGA 54420 ||||||| || | ||| || ||| || | || | || || ||||||||||||||||| Sbjct 24084 TCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTGTGGTACACCACCTTGG 24025 Query 54421 TATTTGTTGGCACGAATCATTTCGACTTCCAGCTGGCGCCATTTGATCATTTCAGGAGTA 54480 ||||| | ||||| ||||||| ||||| || || ||| ||||| || ||||| Sbjct 24024 TATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACGAATCATCTCTGGAGTG 23965 Query 54481 ATGGTTTTCTGCAGCAGAGCGTTAGCTTCAGCTTCTTTACCAGCGGCGTACAGTTTAGCA 54540 || |||||||||| || | |||||||||||||||||| ||| || || | ||||||| Sbjct 23964 ATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGCAGCATATAATTTAGCA 23905 Query 54541 TCAGCATCACGCTCGTTAGCAACCGCGTTTTGTTCACGAGCTTCACGTGCAGCTTCGGCT 54600 || ||||| || ||||| || || | | | ||| ||||| || |||| || || Sbjct 23904 TCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTCTCGATCAGCCTCTGCC 23845 Query 54601 GTCTTAACTTGTTGTTGTGCCACTTTTTCGGCTTTATCCAGATCCGCTTGGGCTTGGTTT 54660 |||||||| ||| |||| |||| | || |||||||| || || ||| ||| Sbjct 23844 TTCTTAACTGCTTGCTGTGTTTCTTTAGCTACTCGGTCCAGATCAGCCTGTGCTGCGTTA 23785 Query 54661 ACTGCTTCTTCGCGAAT-TTTG-GTTTGCTCAACCTG-GTCTTGAATCAGCTTCGGCAGA 54717 || |||||| ||||| |||| |||| | ||||| || || || | | |||| Sbjct 23784 ACCTGTTCTTCACGAATCTTTGTATTTGTT--ACCTGCTTCATG-ATTACATCAGGCAAG 23728 Query 54718 GTAATTTCTTGCAGGAACACTTCGGTTACTTCATAACCA 54756 || || ||||||| ||| | ||| |||| ||||||| Sbjct 23727 GTGATATCTTGCAAGAAGATTTCTTTTACAGTATAACCA 23689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518472560156000