Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_029033.1 Length=45045 Score E Sequences producing significant alignments: (Bits) Value seq7436 87.8 5e-13 >seq7436 Length=408 Score = 87.8 bits (96), Expect = 5e-13 Identities = 214/315 (68%), Gaps = 17/315 (5%) Strand=Plus/Minus Query 41543 TTTCCGGGGCTATTCTTTTACCAGCTTTCTTCTTTCTCGTCGTGCATGGCGTCGAACAGG 41602 || |||||||| |||||||||| | | || ||||| | ||| |||||||||| Sbjct 306 TTGCCGGGGCT-TTCTTTTACCTACCAT-----TTGTCGTCTTCGATGTCGTCGAACAG- 254 Query 41603 TCTTGTCGCTTCCCAGCC--CGCTTACGA-CCGTAGTAGCCCATGGATGCAAGCATATCT 41659 | ||| | ||| ||| | ||| | ||| |||| |||| | | |||||||||| Sbjct 253 TGTTGAC--TTC---GCCTTCTCTTGCTTGCCGCAGTAACCCAGGTCGGAAAGCATATCT 199 Query 41660 TCGGTCATGTTGATGTAGTCGTCGTAGGACACAT-CATCGGGGAACGTTTCGGGCCAATC 41718 ||| ||||||| || |||||| | || |||| || || | | ||| || Sbjct 198 TCGCAGTTGTTGATATAACGGTCGTAATCTATATCCATC-GGAAATGACTTTGGCAGGTC 140 Query 41719 CATGCAAGGCCGCGCACCTTCCGAACCGCTTACCCGGTTGCCGTTGCTGATGTACTGGAT 41778 |||||| || |||| || ||||||| ||| ||| |||||| |||| || | || Sbjct 139 CATGCACGGTTTACCACCGTCAGAACCGCCAACCGTGTTTCCGTTGGTGATATAGTTAAT 80 Query 41779 CGGTCCAGGCGAGTTCGTTCCGTAATAGTAGCGGATCGCTTTACCCAGGAATACGCCATC 41838 || |||| ||| | | |||||||| | || || || ||||||| | ||| ||||| Sbjct 79 CGTACCAGTCGATTGACTACCGTAATACCATCGAATTGCCTTACCCAAGTATAATCCATC 20 Query 41839 CTTTTCGGCACCGCC 41853 ||||| || ||||| Sbjct 19 TTTTTCCGCTCCGCC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143799552340200