Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_029045.1 Length=60216 Score E Sequences producing significant alignments: (Bits) Value seq40328 190 8e-44 seq60383 179 1e-40 seq76547 118 4e-22 seq98424 113 2e-20 seq129722 89.7 2e-13 >seq40328 Length=627 Score = 190 bits (210), Expect = 8e-44 Identities = 332/479 (69%), Gaps = 3/479 (1%) Strand=Plus/Plus Query 42458 TTCCCGTAATGCGGCGGGATGTTGAGTTTGAACGGCATGGAGTCCCAATAATCGTTCACG 42517 || |||||||| | ||||| || |||||||| ||||| | |||||| |||| || || Sbjct 33 TTTCCGTAATGAGAGGGGATATTCAGTTTGAATGGCATTGCATCCCAAAAATCATTTACA 92 Query 42518 TCCTGCTTATCGAAACTTCCCCAATGGCAAAGGGGGTACACCAGATTAAATTTCTTGGCC 42577 ||||||||||| ||| ||||| || || | || || |||| || || ||| | Sbjct 93 TCCTGCTTATCAAAAGAACCCCAGTGACACAATGGATATACCAAGTTGTATCGCTTAGTG 152 Query 42578 GACGCTTTGTTCGGGTCAGCCCGGTCAGGCTCGTCAGACCGCATCCCTATGGCCGTCTTC 42637 ||||| || | | | || || || |||||||||| ||||| ||||| || || || Sbjct 153 GACGCCTTATCCATTGCTGCGCGCTCGGGCTCGTCAGCGCGCATGCCTATTGCGGTTTTG 212 Query 42638 GCGCTCCACCCACGGCGCGCCAGTCCGTTGCTGCGCATCCAGTGGCGGATAGTCTGCGTT 42697 || ||| ||| | | || || ||| |||||||| | ||| || || || Sbjct 213 GCAGACCAGCCATGCCTGGCTAGGTTGTTAGCCCGCATCCATGATCTGATTGTTTGAGTC 272 Query 42698 TTCAGGTAGTCGCTGCACTTCTGGCGCGATATGTTCGGGATGCCCTCGACGCTGATCAGG 42757 || | || || ||||| ||||| || |||| ||| || || || ||||| || || || Sbjct 273 TTTAAATAATCACTGCATTTCTGACGGGATACGTTAGGTATTCCTTCGACACTTAT-AGT 331 Query 42758 CTTTCAAACGGTTCGCCGTTCCGTGCGGCCGTCTCGAAACTGACGATCCGGTGGCGCATC 42817 |||||| || |||||||||| | || || || || |||| || ||| ||| Sbjct 332 TGTTCAAATGGCTCGCCGTTCCTCGATGCTGTTTC-AATGTGACTATTTTGTGTGACATA 390 Query 42818 CCGACGCCGTGTTCCGGACTGGCATAGCCTTCCAGCCAAACCAGATTCAGGCCGAAATGT 42877 || || ||||| || || || | |||||| |||||||||||||| ||||| ||| || Sbjct 391 CCAACACCGTGCTCGGGGCTTGTTACGCCTTCAAGCCAAACCAGATTAAGGCCAAAAAGT 450 Query 42878 TTATCCACCTTGTCGGCGAAGATCAGTGTTTCTTCGTGCTCCCGGCCAGTATTGGCGAA 42936 ||||| ||||| || || || || | ||||| || || ||||| || || || || Sbjct 451 TTATCGACCTTATCAGC-AAAATTAAAGTTTCGGGATGTTCGCGGCCCGTGTTCGCAAA 508 >seq60383 Length=344 Score = 179 bits (198), Expect = 1e-40 Identities = 201/266 (76%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 17175 CCCGCGTTGCTCCGTTCGTTGCACCGAACGTACAGGGCCGCGTGATCAAAGAAAGCGGCT 17234 ||||||| || || | ||| || |||||||| |||||||||| ||||||||| |||| Sbjct 1 CCCGCGTAGCACCTTACGTGGCGCCGAACGTCGAGGGCCGCGTTATCAAAGAAGAAGGCT 60 Query 17235 ATAACACGAAGACTTTTAAACCAGCCTACGTGAAGCCGAAACACGTCATCGACCCTAACA 17294 | | ||| | || || || || ||||| || || || ||||| ||||| || ||| Sbjct 61 GGACCGCGATGCGATTCAAGCCTGCTTACGTTAAACCTAAGCACGTTATCGATCCAAACC 120 Query 17295 TGATCATCCCGCGTCAGCCGGGTGAAG--CGTTGGGTACTGGCACCCTGTCTATCGCGCA 17352 |||| ||||| ||||| || |||| ||| ||||| || |||||| | | || Sbjct 121 TGATTATCCCTGTGCAGCCAGGCGAAGACCGTAC---ACTGGTACGCTGTCTCTGTCTCA 177 Query 17353 GCGCCGCGACCGTGTCATCGCTTACCTGCTGATGAAACACCGCGCCATGCACGAAAATAC 17412 |||||| |||||||| ||||| |||||||| ||||| ||||| || |||||||||| || Sbjct 178 GCGCCGTGACCGTGTTATCGCATACCTGCTTATGAAGCACCGTGCGATGCACGAAAC-AC 236 Query 17413 GTGGGAATGGATGGCGGCGCAGGCTG 17438 |||||||| | | |||||||||||| Sbjct 237 ATGGGAATGCAGGACGGCGCAGGCTG 262 >seq76547 Length=445 Score = 118 bits (130), Expect = 4e-22 Identities = 241/350 (69%), Gaps = 16/350 (5%) Strand=Plus/Minus Query 15425 ATGCGCGAAAACCTGTGTGCAGCGTATGGCGTTGGCC-GACCATCTGCGGACAAACCTTT 15483 |||||| ||| || || | | ||||||||||||| | | ||| ||| ||||||||||| Sbjct 350 ATGCGCAAAACGCTCTGCGAAACGTATGGCGTTGGGCAGGCCAG-TGCAGACAAACCTTT 292 Query 15484 CGCCTTCTCCAACGGCCTCGCTATCATCCCGATTCACGGCACCCTGATTAACCGCTATGG 15543 || ||| ||||| ||| ||||| ||||||||||| | ||||||||||||||| || Sbjct 291 TGCTTTCGTTAACGGTACCGCCATCATTCCGATTCACGGTAGCCTGATTAACCGCTACGG 232 Query 15544 CGGGTATTACTACGGCTACGTGACGGGCTACAATTTTATCCGCAGTCAG--CGTAAT-GC 15600 || ||||| | || ||||| || || || || || ||||| ||||| | | | || Sbjct 231 TGGCTATTATTTTGGGTACGTAACCGGATATAACTTCATCCGTCGTCAGGCTGCACTGGC 172 Query 15601 AGCGCTGGCCGACCCGGATGTAGAGGCGATTATCTACGACGTCAATTCGAACGGCGGGGA 15660 || ||| ||| ||||| ||| ||||| | || || || || || || | Sbjct 171 GGCAATGGACGA---TGATGTCGAGCGTATTATTTTTGATGTGAACAGTAATGGTGGTCA 115 Query 15661 AGCAGCGGGCTGTTTCGAG-TTGTCTCAGGAAATGTTTGATACACGCGGCGAGAAACCTT 15719 ||| | || ||||| ||| ||| | || ||| | | | ||| || || Sbjct 114 GGCATCCGGTTGTTTTGAGCTTGCCGCA-GAACT------CGCCAACCTCGAAAAGCCAA 62 Query 15720 CGCTGGCGGTTGTCGATTCAAACTGCTATTCTGCGGCATATGCGTTGGCG 15769 || ||||||| || ||| | ||||| ||||| || ||||| ||| || || Sbjct 61 CGATGGCGGTCGTGGATGCGAACTGTTATTCAGCAGCATACGCGCTGTCG 12 >seq98424 Length=301 Score = 113 bits (124), Expect = 2e-20 Identities = 204/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 28445 TTCGCAGGCGGCTTCATCGAGTGGATAGATCCGGTGTACGGCGTGGAACGTCGCGGCATC 28504 ||| | ||||| |||||||| |||||||||||| | ||| |||||||||| ||| Sbjct 3 TTCACGGGCGGTTTCATCGAATGGATAGATCCGCAGCGCGGTACTGAACGTCGCGCCATT 62 Query 28505 GAAACCCATACCGGGAATACCATTACCATCTTTGGTACCGTAGACGGCTTGGCCGGGGGC 28564 || || || |||| || || | | || || || ||| ||||||| ||| Sbjct 63 GAGACGCACACCGACAACACGCTGGTGTT-TTCGGCGTGGTCAGCGGACTGGCCGGTGGC 121 Query 28565 TACATCCTCAAGACTTACCCGGGATGCCCGCGCAC--CAGTACGGCCTGTGATACCATCT 28622 || | ||| ||| || || ||||||||||| ||| | || || | | | Sbjct 122 ATGGTCATTAAGGTTTATCCTGGTTGCCCGCGCACGTCAG--CTGCGTGCCAGAGTCGTT 179 Query 28623 TCAACAATCTGGCGAACTTCGGCGGTATCCCGTCGCTGCCAGACCGTTCCCCGTTCGACG 28682 | ||||| |||| || | ||||| ||| || |||| |||||| ||||| |||| Sbjct 180 TTAACAACCTGGACAATTATGGCGGCATCATCTCAATGCCGTCCCGTTCGCCGTTTGACG 239 Query 28683 GCAACCCAATCTTTTAAGGAGAATCGCTATGTGGTGGGCGTTAGCTATGCTGGT 28736 |||| ||| |||| ||||| ||| |||||||||||||| ||||| |||||||| Sbjct 240 GCAATCCAGTCTTCTAAGGGGAAA-GCTATGTGGTGGGCATTAGCCATGCTGGT 292 >seq129722 Length=886 Score = 89.7 bits (98), Expect = 2e-13 Identities = 113/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 20642 AAGAACTACTACTTCCCGAAAGTGTCCATCGCGCCGGACGGCGATTATGCACTGAAAGGC 20701 ||| |||||| ||||||||||||| | | |||||| ||||| ||||| ||||| || Sbjct 7 AAGGACTACTTCTTCCCGAAAGTGGCGCTGCAGCCGGATGGCGACTATGCGCTGAAGGGT 66 Query 20702 GACGACTGGCAGGTCATGTCCTTCACCTTCAAGGCCATGCAGCT--TAACAACATCACGC 20759 || ||||||||||| ||||| ||||| ||| || || |||| | | | | ||| Sbjct 67 GATGACTGGCAGGTTATGTCGTTCACGTTCTCTGCACTGAAGCTGGGATCGGCGT-ACG- 124 Query 20760 AGCGCGTCTACATCGACATCGTCGAAGCGGCC 20791 ||||||| |||||||| || ||| ||| || Sbjct 125 AGCGCGTTTACATCGATGTCCGCGATGCGTCC 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192271634650800