Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq83365 109 2e-19 seq102907 107 6e-19 seq60199 100 9e-17 seq85105 93.3 1e-14 seq64615 93.3 1e-14 seq14835 91.5 5e-14 seq8663 80.6 9e-11 >seq83365 Length=526 Score = 109 bits (120), Expect = 2e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 18116 CGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGA 18175 |||||| || || | || ||| |||||||| | ||| ||||| |||| || | || Sbjct 514 CGGCAACCGCGTGCAGGAAATCTCCGAGATCTCGCGCGGGCTGAAGACGCTGGCGAAGGA 455 Query 18176 GCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGA 18235 | | || |||| | |||||||||||| | || || ||||||||| | || || Sbjct 454 CATGAACGTCCCCGTACTGGCGCTGTCGCAGCTCAGCCGTGCGGTCGAGAGCCGCGAAGA 395 Query 18236 TAAGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGA-CA 18294 ||||| || | ||||| ||||| ||||| || || ||||||||||||||||||| || Sbjct 394 CAAGCGCCCGATGCTCTCGGACCTGCGCGAATCGGGGTCGATCGAGCAGGACGCCGACCA 335 Query 18295 TGATCGCGTTCTTGTTCCGTGAGGCCTACTAC 18326 || | |||| | ||||| |||| || ||| Sbjct 334 TGGTATGGTTCGTCTTCCGCGAGGATTATTAC 303 >seq102907 Length=419 Score = 107 bits (118), Expect = 6e-19 Identities = 164/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 18116 CGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGA 18175 |||||| || || | || ||| |||||||| | ||| ||||| |||| || | || Sbjct 320 CGGCAACCGCGTGCAGGAAATCTCCGAGATCTCGCGCGGGCTGAAGACGCTGGCGAAGGA 261 Query 18176 GCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCA-GAGAGG 18234 | | || |||| | |||||||||||| | || || ||||||||| | |||| Sbjct 260 CATGAACGTCCCCGTACTGGCGCTGTCGCAGCTCAGCCGTGCGGTCGAGAGCCCGCGAGG 201 Query 18235 ATAAGCGACCTCTTCTCTCAG-ACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGAC 18293 | ||||| || | ||||| | |||| || || || ||| |||||||||||||||||||| Sbjct 200 ACAAGCGCCCGATGCTCTCGGGACCTGCGTGAATCGGGT-CGATCGAGCAGGACGCCGAC 142 Query 18294 ATGATCGCGTTCTTGTTCCGTGAGGCCTACTACCTCG---AACGCGAGC 18339 ||| | |||| | ||||| |||| || ||| || ||||||||| Sbjct 141 ATGGTATGGTTCGTCTTCCGCGAGGATTATTACACCGCGCAACGCGAGC 93 >seq60199 Length=441 Score = 100 bits (110), Expect = 9e-17 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 18197 GCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGATAAGCGACCTCTTCTCTCAGA 18256 |||||||||||| | || || ||||| ||| | || || ||||| || | ||||| || Sbjct 434 GCTGTCGCAGCTCAGCCGCGCGGTCGAAAGCCGCGAAGACAAGCGCCCGATGCTCTCGGA 375 Query 18257 CCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGATCGCGTTCTTGTTCCGTGA 18316 ||| ||||| || || ||||||||||||||||||||||| | |||| | ||||| || Sbjct 374 CCTGCGCGAATCGGGGTCGATCGAGCAGGACGCCGACATGGTATGGTTCGTCTTCCGCGA 315 Query 18317 GGCCTACTAC 18326 || || ||| Sbjct 314 GGATTATTAC 305 >seq85105 Length=751 Score = 93.3 bits (102), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 18116 CGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGA 18175 |||||| || || | || ||| |||||||| | ||| ||||| |||| || | || Sbjct 275 CGGCAACCGCGTGCAGGAAATCTCCGAGATCTCGCGCGGGCTGAAGACGCTGGCGAAGGA 334 Query 18176 GCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGA 18235 | | || |||| | |||||||||||| | || || ||||||||| | ||||| Sbjct 335 CATGAACGTCCCCGTACTGGCGCTGTCGCAGCTCAGCCGTGCGGTCGAGAGCCGCGAGGA 394 Query 18236 -TAAGCGACCTCTTC-TCTCAGACCTTCGC-GATTCCGGTGCGATCGAGC--AGGACGCC 18290 ||||| || | | | || ||||| ||| || || ||| ||||||||| ||||||| Sbjct 395 CCAAGCGCCCGATGCGTGTCGGACCTGCGCGGAGTCGGGT-CGATCGAGCCAGGGACGCC 453 Query 18291 GACATGATCGCGTTCTTGTTCCGTGAGG 18318 |||||| || |||| ||||||| |||| Sbjct 454 GACATGGTCTGGTTCGTGTTCCGCGAGG 481 >seq64615 Length=1156 Score = 93.3 bits (102), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 18116 CGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGA 18175 |||||| || || | || ||| |||||||| | ||| ||||| |||| || | || Sbjct 871 CGGCAACCGCGTGCAGGAAATCTCCGAGATCTCGCGCGGGCTGAAGACGCTGGCGAAGGA 930 Query 18176 GCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGA 18235 | | || |||| | |||||||||||| | || || ||||||||| | ||||| Sbjct 931 CATGAACGTCCCCGTACTGGCGCTGTCGCAGCTCAGCCGTGCGGTCGAGAGCCGCGAGGA 990 Query 18236 -TAAGCGACCTCTTC-TCTCAGACCTTCGC-GATTCCGGTGCGATCGAGC--AGGACGCC 18290 ||||| || | | | || ||||| ||| || || ||| ||||||||| ||||||| Sbjct 991 CCAAGCGCCCGATGCGTGTCGGACCTGCGCGGAGTCGGGT-CGATCGAGCCAGGGACGCC 1049 Query 18291 GACATGATCGCGTTCTTGTTCCGTGAGG 18318 |||||| || |||| ||||||| |||| Sbjct 1050 GACATGGTCTGGTTCGTGTTCCGCGAGG 1077 >seq14835 Length=971 Score = 91.5 bits (100), Expect = 5e-14 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||||||||||||||| ||||||||||| |||||| |||||| |||| Sbjct 730 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAATC 789 Query 21210 CTGTCTCCGCAACCAGTTACAGC 21232 ||| | |||||||||||| |||| Sbjct 790 CTGCCCCCGCAACCAGTTTCAGC 812 >seq8663 Length=2426 Score = 80.6 bits (88), Expect = 9e-11 Identities = 146/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 18120 AATCGGGTCAATGAGATCGCCGAGATCAC-CTCCGGCTTGAAGTCGCTCGCCAGAGAGCT 18178 || || | ||| ||||||||||||||| | | | ||| ||| ||||||||| |||| | Sbjct 637 AACCGCGCCAACGAGATCGCCGAGATCTCTCGCTCGCTC-AAGGCGCTCGCCAAAGAGAT 579 Query 18179 CGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGATAA 18238 | | | ||| || ||| || ||||| || || | | | ||| | | | | || Sbjct 578 GAAGTGCCCTGTCATTGCGCTATCCCAGCTCAACCGGGGACTGGAGTCCCGGCCGAACAA 519 Query 18239 GCGACCTCTTCTCTCA-GACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGA 18297 ||| ||| || | || || || || ||||| || |||||||||||||| ||| ||| Sbjct 518 GCGGCCTGGCCTTGCCCGATCTGCGTGAGTCCGGCGCCATCGAGCAGGACGCGGACGTGA 459 Query 18298 TCGCGTTCTTGTTCCGTGAGGCCTACTACC 18327 || |||| ||| ||| || | ||||||| Sbjct 458 TCATGTTCCTGTACCGCGACGAGTACTACC 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162273323345400