Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_029050.1 Length=51896 Score E Sequences producing significant alignments: (Bits) Value seq70970 378 2e-100 seq51106 212 2e-50 seq55262 183 1e-41 >seq70970 Length=636 Score = 378 bits (418), Expect = 2e-100 Identities = 386/500 (77%), Gaps = 3/500 (1%) Strand=Plus/Minus Query 51395 TGGACGGAGCACGAGAAGGTTGCAATCATCCGTCTGGAAGAGGATGAGGAGGAGTCAGTA 51454 ||| | ||| | |||||||| | || |||| || || || ||||| || || || | Sbjct 600 TGGTCTGAGGATGAGAAGGTAGGTATTATCCACCTTGAGGAAGATGAAGAAGAATCTATC 541 Query 51455 AACAGCCTGTACGCTGAGGAGTTGAAAGTTGACCCTAAAGCCTTCGTTGCTGACCCGGAA 51514 ||||| || ||||| ||||| |||||||||| || || | || || |||||||| ||| Sbjct 540 AACAGTCTTTACGCAGAGGAAATGAAAGTTGATCCAAAGGAATTTGTAGCTGACCCAGAA 481 Query 51515 CAGTTCTTGACAGAGGAAGAGCACCTTGCGATTCACCAACGCTGGATTGCCGAAGATAAG 51574 |||||| |||||||||| ||||| | |||||| || |||||| ||||||||| Sbjct 480 CAGTTCCTGACAGAGGATCAGCACTCGGAGATTCATTCTCGATGGATTCATGAAGATAAG 421 Query 51575 ATCAAGATCTTTGACCACTTCGGTTCTATCCCGACTGATCAGTTGATCCAGAAGCTGAAA 51634 | || |||||||| ||||| || || || |||||||||||| |||| || ||||| ||| Sbjct 420 GTTAAAATCTTTGATCACTTTGGGTCCATTCCGACTGATCAGCTGATGCAAAAGCTTAAA 361 Query 51635 CAGATGGTGTTCCTGGATGGTTGTAAGTGGATTATCCTTGATCACCTGTCGATGGTAATC 51694 |||||||| ||||| ||||| ||||| ||||||||||| || ||| | || ||||| || Sbjct 360 CAGATGGTATTCCTTGATGGATGTAAATGGATTATCCTAGACCACTTATCAATGGTTGTC 301 Query 51695 TCTGGCCTCAAGTCAGATAACGAACGTCGAGATCTGGACAACATCATGACCGAGCTTGCG 51754 || | || || ||||| ||||| || || |||| ||||| |||||||| || || Sbjct 300 AGCGGGTTGAAATCCGATAATGAACGCCGTGACTTGGATAACATTATGACCGAACTGGCA 241 Query 51755 GCATTCTGTAAGCAGTATGATGTGTTCATTCTCAGTATTAGCCACATGAAGCGTAAAGAA 51814 ||||| ||||||||||||||||| || || || ||| || |||| ||||| ||||||||| Sbjct 240 GCATT-TGTAAGCAGTATGATGTATTTATCCTGAGTGTTTGCCATATGAAACGTAAAGAA 182 Query 51815 CTTCAGTTACCGAAGGATAAAGACGGAAACATGTTGCCTTTCTGGTATCCTGTACGTAAA 51874 | ||||| || || |||||||| ||||| || || |||||||||||||| ||| || Sbjct 181 ATCCAGTT-CCAAAAGATAAAGATGGAAATGCCTTACCATTCTGGTATCCTGTTCGT-AA 124 Query 51875 GAAGACCTGCGTGGTTCTGC 51894 || ||||| |||||||| || Sbjct 123 GAGGACCTACGTGGTTCAGC 104 >seq51106 Length=620 Score = 212 bits (234), Expect = 2e-50 Identities = 235/300 (78%), Gaps = 10/300 (3%) Strand=Plus/Plus Query 51605 CCGACTGATCAGTTGATCCAGAAGCTGAAACAGATGGTGTTCCTGGAT-GGTTGTAAGTG 51663 || ||||||||| | || || ||||| || |||||||| ||||| ||| |||||||| || Sbjct 1 CCAACTGATCAGCTTATGCAAAAGCTCAAGCAGATGGTATTCCTTGATTGGTTGTAAATG 60 Query 51664 GATTATCCTTGA-TCACCTG-TCGATGGTAATCTCT-GGCCTCAAGTCAGATAACGAAC- 51719 ||||||| | || |||| | || ||||| || | || | ||||| ||||| |||| Sbjct 61 GATTATCTTAGAGTCACTTTATCAATGGTTGTCAGTTGGTTTGAAGTCTGATAATGAACC 120 Query 51720 GTCGAGATCTGGACAACATCATGACCGAGCT-TGCGGCATTC-TGT-AAGCAGTATGAT- 51775 | || ||| |||| ||||| ||||| || || ||| |||||| ||| |||||||||||| Sbjct 121 GCCGTGATTTGGATAACATTATGACAGAACTATGCAGCATTCCTGTTAAGCAGTATGATT 180 Query 51776 GTGTTCATTCTCAGTATTAGCCACATGAAGCGTAAA-GAACTTCAGTTACCGAAGGATAA 51834 || || || || ||| || |||| ||||| |||||| ||| ||||||| || || ||||| Sbjct 181 GTATTTATCCTGAGTGTTTGCCATATGAAACGTAAATGAAATTCAGTTTCCAAAAGATAA 240 Query 51835 AGACGGAAACATGTTGCCTTTCTGGTATCCTGTACGTAAAGAAGACCTGCGTGGTTCTGC 51894 ||| ||||| || || |||||||||||||| |||||||| ||||| |||||||| || Sbjct 241 AGATGGAAATGCCTTACCATTCTGGTATCCTGTTCGTAAAGAGGACCTACGTGGTTCAGC 300 >seq55262 Length=779 Score = 183 bits (202), Expect = 1e-41 Identities = 506/775 (65%), Gaps = 2/775 (0%) Strand=Plus/Minus Query 50503 CGACAAGTACGGTAAGCTGACAGGCTATAAAAAACGTGACTGGACTCTGCCGAAAGAGAA 50562 ||| ||||| || || | |||| | |||||| ||||||||||| || || ||||| || Sbjct 779 CGATAAGTATGGGAAATTATCAGGATTTAAAAAGCGTGACTGGACACTACCTAAAGACAA 720 Query 50563 GAAAGGCCACTTTAGTGTAGTGGGGACCGTCAAGGCTGCATCACAGTTCTTCGGTCAGCA 50622 ||| || ||||| | || || ||||| || || || |||| ||| | || || ||| | Sbjct 719 GAAGGGTCACTTCACCGTGGTAGGGACTGTTAAAGCCTCATCCCAGATGTTTGGACAGAA 660 Query 50623 CGAAGCTGCAATGGGTGCAGGCCGTAAACAAATCTTCGTAGTTGAAGGTGAGGGTGATGT 50682 ||| | ||| ||| |||||||| ||| | |||||||| |||||||| Sbjct 659 ACAAGTAAGTTTAGGTAACAACCGGAAACAAATTAACGTTTTAGAAGGTGAAGGTGATGT 600 Query 50683 GACCGCTGGCTGGCAGGCGGGGTTTGAGTTCGTTAAGGCCCTATCTGCAAGTCCTAATGC 50742 || || | ||| | || | || || | || | || |||| ||| || Sbjct 599 AACAGCGGCGTGGGAAGCTGCTTTCCAGCAAATGAAAAATATTTCCGCAAACAGTAAAGC 540 Query 50743 TCCGAAAGGTGTGAAGGATTGGGCCGCAAGCGTCCTGAAAGGGATTGCTGCGATCCAGAA 50802 ||| ||| | || | || | | || ||||||| ||| ||| || || | Sbjct 539 TCCCGCTGGTTTAAAATCCTATGCAGACAATGTTTTGAAAGGTATTCGTGCCATTCAAGA 480 Query 50803 TGGTGAGGAAGTTGCGGGTGTTCCGACATTGCCGTTTGTCGGATTAAACTGCGGCACTGC 50862 || |||| | || | || | |||| || || || | || ||||||||||| Sbjct 479 AGGCAAGGACCCAGAAGGATTGCCTATTCTGCCATTCGTAGGTATTAATTGCGGCACTGC 420 Query 50863 CAACGCTGTGGATACTTTCGCCAACAACGAGAAGTTCATCCGTGGCTACGAGAAGGTTGT 50922 |||||| || || || || ||||| |||||||| | ||| | || || ||||| Sbjct 419 CAACGCCACAGAGACCTTTGCAAACAATGAGAAGTTTGTACGTCAGTTTGAAAAAGTTGT 360 Query 50923 TCTCGGTTTCGATAACGATGAAGCAACAGCTCTCGAAAAGGAACGTAAAGTCAAGAAAGG 50982 ||| | ||| || || || || || ||| || || || || || || || ||||| Sbjct 359 TCTGGCTTTTGACAATGACGAGGCGACATTACTGGAGAAAGAGAAAAAGGTTAAAAAAGG 300 Query 50983 TAAGGAAGCTACTGATGATGTTGCGGCGTTTCTGCTGACAGATAATATCTTCGTGGCACG 51042 ||||||||||| |||||||| || ||| | || ||||||||||||| |||| Sbjct 299 CAAGGAAGCTACCGATGATGTAGCCAGCTTTTTACTTTCAGATAATATCTTTGTGGTGAA 240 Query 51043 TTACCCCAACGAACGAAACGATCCGTCTGGTGTGAAAGATGTTCGCGACATGTATGACGC 51102 || || |||||| | |||||||| | || ||||| |||| || |||||||| | Sbjct 239 GTATCCTAACGAAAGGAACGATCCAGCCGGATATAAAGACATTCGGGATATGTATGATGA 180 Query 51103 TGGCAAGGGCCGTGAGATCTGGAATATGTTCTCCAAGGCAGAAGACAAATACGTCCCGGA 51162 ||| || | ||| |||| | |||||| | || ||||| || || ||||| || Sbjct 179 TGGTAAACTCTATGAAATCTACATTATGTTTACTAAAGCAGATGATCGCTATGTCCCAGA 120 Query 51163 CAAGCTGATCAGTCTGAGCAACATCACCATTGAAAATCTTCGCAAGAAGAAGAAAGATGG 51222 ||| |||| | || | || | ||||| || | | ||||| ||||||||||| Sbjct 119 CAAATTGATTGGGTTGTCAGATATTTCGATTGAGGATTTAAGAAAGAAAAAGAAAGATGG 60 Query 51223 TGTGCCATTACC--GGGGATGCCTCGACTTTATGAGTTGACCAAAGGGCCTCGTA 51275 | || | || | | ||| ||| || || |||| ||||| ||||||| Sbjct 59 CATCCCGATGCCAAATGATTCCCTAAACTGTACGATATGACTAAAGGTCCTCGTA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165688830298800