Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq61517 376 8e-100 seq75716 322 1e-83 seq42047 123 8e-24 seq68955 120 9e-23 seq57994 120 9e-23 seq26185 113 1e-20 seq55154 105 2e-18 >seq61517 Length=1144 Score = 376 bits (416), Expect = 8e-100 Identities = 391/509 (77%), Gaps = 3/509 (1%) Strand=Plus/Plus Query 23867 ATGAAACCCGAGCACCTTGCGAAGCTCCGGGACAAGCTGTGGCGCCTGAACAACCTGTAT 23926 ||||| || || ||||| | || ||||| ||||| ||||| ||||| |||| || Sbjct 588 ATGAAGCCAGAACACCTCAAGCTTCTGCGGGATAAGCTCTGGCGACTGAATCACCTCTAC 647 Query 23927 TTCATCACCGACAAGGCAGGCAAGAAGACTCGCTTCCGCATGACAGCGGAGCAGTTGGAG 23986 | || || ||||| | ||||||| || || ||||| | ||||| | || Sbjct 648 TGGATTACTGACAAAGAAGGCAAGCCAGTACGTTTTAAAATGACGCCTGAGCAACTCGAA 707 Query 23987 TATTTCGAAGGCCTGCACACTCGGAACATCATCCTGAAGGCACGCCAGCTCGGCTTTACG 24046 || ||||||||| |||| || || ||||||||||||||||| |||||| | || ||||| Sbjct 708 TACTTCGAAGGCATGCATACCCGCAACATCATCCTGAAGGCTCGCCAGTTAGGTTTTACA 767 Query 24047 ACTGAGCAGTGCATCATTCAACTGGACGCGGCGCTGTTCGAGTCGGCCAAGTGCGCGCTG 24106 |||||| || || ||||| | ||||| || ||||||||| | || |||||||| ||| Sbjct 768 ACTGAGGTTTGTATTATTCAGTTAGACGCTGCTCTGTTCGAGGCTGCAAAGTGCGCCCTG 827 Query 24107 ATTGCTCACACCCTGAATGATGCCAAGCGCCTGTTCCGGGAGAAGATCAAGTTCGCGTAC 24166 || || ||||| ||||| || |||||||| || ||||| |||||||| || | || ||| Sbjct 828 ATAGCGCACACGCTGAACGACGCCAAGCGACTTTTCCGCGAGAAGATTAAATATGCATAC 887 Query 24167 GACAATCTGCCGGCAGAGATCAAGGCGGCCAACCCGGCGCGCAACGACGCAGCCGGTGAG 24226 ||| |||||| ||||| ||||| | ||||| || ||||||| || || || ||| Sbjct 888 GACCGCCTGCCGAATGAGATTAAGGC-CCTAACCCTGCTAGCAACGATGCTGCTGGCGAG 946 Query 24227 CTGGTATTCGCCAAGGGCGGCTCGCTGTATGTCAGCACGTCATTTCGTGGCGGCACGCTG 24286 ||||| ||| ||||||||||| || ||| |||||||||| || |||||||||||||| Sbjct 947 CTGGTGTTCAGTAAGGGCGGCTCACTCTATATCAGCACGTCTTTCCGTGGCGGCACGCTT 1006 Query 24287 CGTTACCTGCACGTCTCCGAGTTCGGAAAGATCTGCGCCAAGTTTCCGCACAAGGCGCGC 24346 ||||| ||||| || ||||||||||| ||||| ||||| ||||||||| || |||||||| Sbjct 1007 CGTTATCTGCATGTTTCCGAGTTCGGCAAGATATGCGCTAAGTTTCCGGAC-AGGCGCGC 1065 Query 24347 GAGATCGTCACTGGTGCGTTTGAGGCGGT 24375 ||||| || |||||||| ||||| || || Sbjct 1066 GAGATTGTTACTGGTGC-TTTGAAGCAGT 1093 >seq75716 Length=840 Score = 322 bits (356), Expect = 1e-83 Identities = 364/481 (76%), Gaps = 5/481 (1%) Strand=Plus/Plus Query 24822 TCTGGGACATCGGCGTGGGCGACTCAACGGCGATCTGGTTCGTTCGGATCGTTGGCGATG 24881 ||||||| |||||||| |||||||| ||||| |||||||| || || ||||||||||| | Sbjct 1 TCTGGGATATCGGCGTAGGCGACTCCACGGCCATCTGGTTTGTGCGCATCGTTGGCGAGG 60 Query 24882 AGTTCCACGTCGTCGACTACTACGAGAACAGCGGCGAAGGCCTGCGGCACTACATGAAGG 24941 | | ||| || ||||||| ||||||||| || ||||| || |||||||||||||||| Sbjct 61 AATATCAC-TCATCGACTATTACGAGAACTCAGGAGAAGGTCTCCGGCACTACATGAAGG 119 Query 24942 TGCTTAAGGAGCGCGGCTACACGTACGGCGACCACTGGGGGCCGCACGACATCGACAACC 25001 |||| ||||| | || || ||||| || |||||||| ||||||||||||||||||| Sbjct 120 TGCTGAAGGATAGGGGGTATGAGTACGCCGCTCACTGGGGTCCGCACGACATCGACAACC 179 Query 25002 GCGAGTTCGGTAGCGACGGCAAGACCCGCCGCGAGATCGCAAAGGAAGGCTACGAGTTCG 25061 ||||||| || || | || | ||||||||| | || ||||| ||||| | | Sbjct 180 GCGAGTTTGGCTCTGATGCGAAATCACGCCGCGAGCTGGCCCGCGAAGGTTACGAAATTG 239 Query 25062 ACGGCCAGCGCTACAGCATCCGCTTCCAGGTGGTGCCGAAGCTGGGCGTAGACGATGGCA 25121 ||||| ||| |||| |||| ||| ||||||||||| ||||||||||| || || || | Sbjct 240 ACGGCGTGCGATACACCATCACCTTTCAGGTGGTGCCAAAGCTGGGCGTCGATGACGGTA 299 Query 25122 TTGATCACGTACGCGAGATCCTTCCCCGCTGCGCCTTCGATGACTCGAAGTGTG-AGACG 25180 | || || || || || ||||| || || ||||| || || ||||| | ||| Sbjct 300 TAGAGCAGGTGCGTGAAATCCTGCCTAAGTGTGCCTTTGACGAGCACAAGTGCGCTGAC- 358 Query 25181 GGCATTGCCTGC-CTCGAAAACTACCGCAAGGAATGGGACGACAAGCGCGGCTGCTGGAA 25239 |||||| ||| || ||| ||||||||| || |||||||||| || ||||||||||| Sbjct 359 GGCATT-ATTGCGCTGGAAGGCTACCGCAAAGAGAGGGACGACAAACGTGGCTGCTGGAA 417 Query 25240 AGACAAGCCGCTTCACGACTGGTCGTCTCACGGCTCCGACGCATTCCGCTATTTCGCTGT 25299 |||||| || || || ||| | || ||||| | ||| ||||| |||||||| || Sbjct 418 AGACAAACCTCTACATGACCACACATCACACGGGGCTGACAGCTTCCGTTATTTCGCCGT 477 Query 25300 G 25300 | Sbjct 478 G 478 >seq42047 Length=5651 Score = 123 bits (136), Expect = 8e-24 Identities = 405/617 (66%), Gaps = 43/617 (7%) Strand=Plus/Plus Query 29735 GACGGCAAGCCCGTTTACGTTGAGGACGACGGCAAAGAGGTTGCCTTCGATGCGGTTGGC 29794 || ||||| ||||| ||||| ||||||||||||||||| | || || ||||| ||| Sbjct 1671 GATGGCAAACCCGTGTACGTGCAGGACGACGGCAAAGAGCTGGCATTTGATGCTCCCGGC 1730 Query 29795 ACCCGGGCGACCATCACCCGACTGAACGCCGAAGCCAAGCAGCACCGCGAGCGCGCTGAG 29854 |||| | || ||| | || || || | || || ||| ||||| || || |||||| Sbjct 1731 ACCCTGCAAACAATCTCGCGCCTTAATGGTGAGGCTAAGTCTCACCGTGAACGTGCTGAG 1790 Query 29855 ACCGCCGAGAAGACCGCAAAAG-CCTTCGAAGGTATCGATGACGCCGGGGCAGCCCGCAA 29913 | || || || | || ||| |||| ||||| |||||||| | | || || | Sbjct 1791 AGTGCGGA-AACGCAGCTGAAGACCTTTGAAGGAATCGATGATCCGGCTGCTGCGCTGGC 1849 Query 29914 GGCTCTGGAGATCGTCGCAAACCTCGACGCGAAGAAGCTGGTGGATGCCGGCGAGGTCGA 29973 ||| ||||| | ||| ||||| || | |||| ||||||||||||||| || |||| Sbjct 1850 GGCACTGGACACCGTGAAGAACCTGGAAGACAAGACGCTGGTGGATGCCGGTGAAATCGA 1909 Query 29974 GAAGG-------TGAAG-----CAGGAAATCGCCAAGGGCTATCAGGCCCAGCTGGACGA 30021 |||| ||||| | |||| | | ||| | | | ||| | || | Sbjct 1910 TAAGGTCCGTACTGAAGCTGTCCGGGAACTGG--AAGAGAAGTATGCCCCCACGTGA--A 1965 Query 30022 AGCCAACACCAAGGCGCAGACCCTAGAGCAGCAACTGTACGGC-GAGAAGATCGGCGGCA 30080 || || ||| |||| || ||| | || |||||| ||||| || ||||| | Sbjct 1966 AG--------AACGCGACGACCTGAG-CCAGAAGCT-TACGGCGGAGAAAATTGGCGGTA 2015 Query 30081 GCTTCGCTCGCTCCAAGGTCATCGCCGAGAAGCTGGCTGTCCCGGCAGACATGGTGCAGG 30140 | || || || ||||| |||||||||||||| || ||||||| || ||| | | | Sbjct 2016 GTTTTGCCCGTTCCAAATTCATCGCCGAGAAGATGAGCATCCCGGCTGATCTGGCGGAAG 2075 Query 30141 CCACCTTCGGGAATCGCTTCAAGATCGAGGACGGCAAGGTCGTC---GCCTATGACGCCA 30197 || ||||| | ||| || || | ||| | | |||| || | ||| | Sbjct 2076 CCCGTTTCGGCAGCAACTTTCAGGTC---GTCGGTGACGCCGTCACGGCGTTTGA-TCGT 2131 Query 30198 ACGGCAACAAGATCTTCAGCCGTGCG---CGCCCGGGTGAGCTGGCCGACTTCGATGAAG 30254 ||| ||||| ||||||| ||||| | || ||||| || | || ||||||| Sbjct 2132 GCGGAAACAA-ATCTTCA---GTGCGGTCAGACCCGGTGAAGCAGCGGGGTTTGATGAAG 2187 Query 30255 CGCTGGAAACCCTCGTCGACGCTTATCCCCACAAAGACCACATCATAAAGGGCACTGGCG 30314 ||||| | || || || ||||| | ||||| || ||| | ||||||||||||| Sbjct 2188 CGCTGAGCATTCTTGTTGAGCACTATCCGTATAAAGAGCAGATCCTCAAGGGCACTGGCG 2247 Query 30315 CCAACGGCGGCGGCGCT 30331 | ||||||||| || Sbjct 2248 CATCAGGCGGCGGCTCT 2264 Score = 86.0 bits (94), Expect = 2e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 26070 GCCGCCGCTGCTCGAACTGGCGCACCTCAACGTCAAGCACTGGCAGTCCCAGAGCGATCA 26129 |||||||||| |||||||| ||||||||| | ||||||||||||| || ||||| Sbjct 872 GCCGCCGCTGGCTGAACTGGCCTGGCTCAACGTCGAACACTGGCAGTCCCGCAGTGATCA 931 Query 26130 GGACAACCTCCTGCACGTCGCCCGGGTGCCGCTGCTGTTC 26169 | | | | ||||||| |||||||| || ||| |||| ||| Sbjct 932 GCAGACCATCCTGCATGTCGCCCGCGTACCGGTGCTCTTC 971 >seq68955 Length=479 Score = 120 bits (132), Expect = 9e-23 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 18439 GCTGGCTGGGATCGACTGACTGACGTGCAGAAGCAATCGCTCGAGGTCATCGCTGACAAG 18498 || ||||||| || ||| || || ||| ||| ||||| ||| ||| |||||| Sbjct 22 GCAGGCTGGGCACGGCTGGATGCCGCCCAGCGTCAAGCGCTCACGGTGATCTGCGACAAG 81 Query 18499 GTGGGGCGCATCCTATCAGGCGACCCAAACTACGCCGACAACTGGCACGACATCCAGGGC 18558 | | ||||||||| || ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 82 ATCGCGCGCATCCTGTCTGGCGATCCCAACTATGCCGACAACTGGCACGACATCCAGGGC 141 Query 18559 TACGCGAAGTTGGCCGAGGACCGCCTGCC 18587 || || ||| ||| ||||||||| |||| Sbjct 142 TATGCAAAGCTGGTCGAGGACCGGTTGCC 170 >seq57994 Length=641 Score = 120 bits (132), Expect = 9e-23 Identities = 186/263 (71%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 4075 TCGAAGATCCGAGCAGCCTGCGACTCGTCCAGCGACGTGCCGCCCGGCATGGCCACCCAG 4134 ||| |||| | || |||||| |||| || || |||| || |||| | |||| Sbjct 571 TCGTAGATATGCGCTGCCTGCTCCTCGCTAAGGGAGACACCGCAGGGGTTGGCTATCCAG 512 Query 4135 CCTGAGCCGATGATGTGATTCGGGTTGCAGCTTTTCACCAGCGCTCGGTAATGCTCCTCG 4194 | ||||| |||||| || |||||| | | || ||| || ||||| ||||||||| Sbjct 511 GCGCTGCCGACGATGTGCGCCGA-TTGCAGGTGTCCATCAGTGCCCGGTAGTGCTCCTCG 453 Query 4195 AGCACGCCGGACAGGCTGTCGGATCGGTAAATGCCCTGCGGCGCGATCTCGCTGGCCTTG 4254 | || ||| || | ||| ||| ||||| | | |||||||||||||| || | Sbjct 452 ATAACCTCGGTGAGCTGGCCGGCCAGGTGGATGCCTGGTGTCGCGATCTCGCTGGACT-G 394 Query 4255 ATGTACTGCTCGCCCTTCTGGTCGACGCAGAACGCAGCCAGGTAGATGACCCAGCTATGG 4314 ||||| ||| ||| ||||| |||| |||||| || | |||||||||||||| ||| Sbjct 393 ATGTAGTGCAGGCCGTTCTGATCGATGCAGAAGGCGCTGAAGTAGATGACCCAGCGGTGG 334 Query 4315 GCTATGTCGCAGATGGCCTCGGC 4337 || |||||||||| ||| | ||| Sbjct 333 GCGATGTCGCAGACGGCGTTGGC 311 >seq26185 Length=1059 Score = 113 bits (124), Expect = 1e-20 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 36453 AAGCAGCATAAGAATGTCGTTCGAGATATCCGCGAAATGCTCCAGGCGCTTGAAGAAGAT 36512 ||||| || ||| | ||| | || || ||||| | |||| |||| || ||||| ||| Sbjct 623 AAGCAACACAAGGACGTCATCCGCGACATCCGTGTGATGCAGAAGGCCCTGGAAGAGGAT 564 Query 36513 GGCTCAGATTTGAGCCATGTCGCCGAACGGAAGGATGCCCGCGGGTACACGTCAGAG--T 36570 ||| |||||||| ||||| || || |||||| | ||||||||||| ||| | | Sbjct 563 GGCGCAGATTTGCGCCATCTCCGTGAGGAGAAGGACGGGCGCGGGTACAC--CAGCGCTT 506 Query 36571 TTCGGCTGGACCGAGAGCTGACAGAGACTCTTTTGACGGGCTACAGCGTCCCGCTTCGAA 36630 | | || ||| || ||||| ||||| || | || ||||||||| ||||||| || Sbjct 505 TCCACCTCGACAAGGACCTGACCGAGACCCTCGTAACCGGCTACAGCATCCCGCTGCGCC 446 Query 36631 GGAAGGTGGTTCGCCGGCTTCATGAGCTCGAAG 36663 |||||| ||||||| || || ||||||| || Sbjct 445 ACAAGGTGATTCGCCGCCTCCACGAGCTCGGAG 413 >seq55154 Length=2853 Score = 105 bits (116), Expect = 2e-18 Identities = 166/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 18355 CTGGCCGAGCGCGGCAGCCGTTACGGCGACTTCACCGACCACGCCCGGATCTGCCAGAAC 18414 || |||||||||||| || || || || |||| |||||||| |||||| ||||| Sbjct 1333 CTCGCCGAGCGCGGCGCTCGGTATGGAGATTTCAGTGACCACGCTGCGATCTGTCAGAAG 1274 Query 18415 CTCAA-ACGCACTATGT---GCGCCGAAGCTGGCTGGGATCGACTGACTGACGTGCAGAA 18470 |||| | | | | | | |||| || |||| | | || | | ||||||||| Sbjct 1273 ATCAAGATGGCGTTTCTCACGGGCCG--GCCAACTGGAACAGGTTGTCGGGCGTGCAGAA 1216 Query 18471 GCAATCGCTCGAGGTCATCGCTGACAAGGTGGGGCGCATCCTATCAGGCGACCCAAACTA 18530 ||| |||| ||||| ||||| |||||| | | ||| ||||| || || || ||||| Sbjct 1215 GCAGGCGCTAGAGGTTATCGCGGACAAGATCGCGCGTATCCTTAGCGGTGATCCTAACTA 1156 Query 18531 CGCCGACAACTGGCACGACATCCAGGGCTACGCGAAGTTGGCCGAGGACCGCCTG 18585 || ||||||||| || |||||||| ||||| ||||| || ||||| | ||| Sbjct 1155 CGATGACAACTGGATTGATATCCAGGGATACGCCAAGTTAGCGCAGGACAGACTG 1101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155368823320800