Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_029072.1 Length=94766 Score E Sequences producing significant alignments: (Bits) Value seq34300 383 1e-101 seq93744 111 1e-19 seq91943 98.7 6e-16 >seq34300 Length=21418 Score = 383 bits (424), Expect = 1e-101 Identities = 898/1347 (67%), Gaps = 30/1347 (2%) Strand=Plus/Minus Query 2289 CCTGCCAGCCCCAAGCAGAAAATGATCCTGGAAAACAACGCACAAATCCTGATCATTGGG 2348 |||||||| || || ||||||||||| ||||| | || || ||||| || || || Sbjct 9088 CCTGCCAGTCCAAAACAGAAAATGATTTTGGAATCTGATGCTCAGATCCTAATTATAGGA 9029 Query 2349 GGTGCGGCGGGGTCAGGTAAATCCTACCTGCTTCAATTAATGCCATTGCAAATCATCGAC 2408 || || || || || || || || || | || ||| | || || || || ||| Sbjct 9028 GGAGCAGCAGGTTCTGGCAAGAGTTATCTTTTACAGTTACTCCCTTTATTTATTATTGAC 8969 Query 2409 GACCCAAGAACAAACTGCATCATGTT-CCGTAGAAACACCCCTCAGTTGAAGGGTGGTGG 2467 || || | || |||||||| ||||| ||| |||| |||| | | | || || Sbjct 8968 GATCCCAACACCAACTGCAT-ATGTTTCCGCAGAACTGTCCCTATGCTTAGAGGCCAGGG 8910 Query 2468 TGGTCTGTACGATACAGCAAGAGGTATTTATACACAGCTTGATCCTGAGTGGA-AGCCCC 2526 ||| | || ||||| ||||| || || ||||||| | | | | | || || Sbjct 8909 AGGTGTCTATGATACCGCAAGTTCAATATACTCACAGCT--ACCTTTAAAACATAGACCA 8852 Query 2527 GCTT-CAGGGAGAAGGACTTGGAAGCTATTTTCCCATCTGGTGCCAAAGTTAAGTGGTCC 2585 | | || ||||| ||||| || ||||| ||||| || || || || | Sbjct 8851 AAGAACCGAGACAAGGAGATGGAATTTAAATTCCCTTCTGGCGCTAAGGTCAAATTTATG 8792 Query 2586 CACATGGAGTATGAGAAAGATAAATATTCTCAC-CAAGGTCTTCAGTACACCTTTGTCGG 2644 ||||| || | |||||||||| | || || |||| |||||||| | | Sbjct 8791 GGTATGGAATACGTAAAAGATAAAT-TAAACATTCAGGGTCACCAGTACACACTGATTAC 8733 Query 2645 TTTTGACGAAGGAACACAGTTTGAATGGTCACAGATCGAATACCTTATGTCTCGTCTTCG 2704 | || ||| | ||||||||||||||| ||||| || ||| | ||||| || || | Sbjct 8732 AGTAGATGAAAGTACACAGTTTGAATGGGAGCAGATTGACTACATGATGTCACGCCTCAG 8673 Query 2705 TTCTGAATCTAAATATCCAAGCCGTATGGTAATCTCCTGTAACCCTGATCCTGACCACAA 2764 || | || |||||||| | |||||||| ||||||||||| ||||| ||||| || Sbjct 8672 ATCAAACTCCAAATATCCCTCAAGAATGGTAATGTCCTGTAACCCAGATCCAGACCATAA 8613 Query 2765 AATTAAGGAACTGATCGACTGGTATCTTGATGATGACGGTTTCCCTATCCCTGAAAGGGA 2824 ||| || ||||| || || |||||| | ||||| || | | |||| |||| || ||||| Sbjct 8612 AATAAAAGAACTTATTGAATGGTATTTAGATGACGAAGCTATCCCATTCCC-GAGAGGGA 8554 Query 2825 TGGTGTTATTCGTTGGTTTATTCGTCGTGATGGTGAGTTTATCTGGAGCGAGACAGCGGA 2884 |||||||| | | || || || | ||||| || || |||||| | || | | || Sbjct 8553 TGGTGTTAAAAGATATTTCATACGCCAGGATGGAGAATTCATCTGGGGAGAAAGTCCAGA 8494 Query 2885 AGAGCTTATCGAGAAATATTGGGATGGTGTTGATGTTCGTAAGAAACCAAAACCGCTGTC 2944 |||| | | | ||||| | ||| ||||| |||| | || Sbjct 8493 AGAGTTAAAACAAAAATACGGTAATG-------------TAAGA--CCAA------TTTC 8455 Query 2945 CTTCTCATTCATCAGTGCGACTATCTTTGATAACCCACCGATGCTTGACAATAACCCAGA 3004 ||||| || ||| |||| || || | ||||||||| |||||||| | |||||||| || Sbjct 8454 TTTCTCTTTTATCGGTGCAACAATTTATGATAACCCGCCGATGCTAAATAATAACCCTGA 8395 Query 3005 TTACCTCGCATTCCTTGAAGGCTTGCCTGAAATAGAAAAGGCGCAGCTACTTCACGGTAA 3064 |||| | || || | ||||| || || || |||||||||| ||||| ||||| ||||| Sbjct 8394 TTACTTAGCTTTTTTGGAAGGATTACCAGAGCTAGAAAAGGCTCAGCTCCTTCATGGTAA 8335 Query 3065 CTGGAAGGTAAGACCAGAGGGTGCTAACTACTTCCAGAGGTCTTATCTGAAAGAAGTTCC 3124 |||||| | | | || || || || || || || || | | ||||||||| Sbjct 8334 CTGGAATGCTCGTATCGCTGGCGCAAATTATTTTCAAAGAGGTTTTTTAAAAGAAGTTGA 8275 Query 3125 TTGCCTTCCTCTTGGTGTGACATCTGTTCGTCCATATGATAAGGCGGGTACAGAAAGGAC 3184 || | | || | | || ||||| | |||| ||||| || || || ||||||| Sbjct 8274 TTACTTACCCATGGATGCAGTGTCTGTAAGAGCATACGATAAAGCAGGAACGGAAAGGAG 8215 Query 3185 TTCTGGAAACAGGTATCCCGACTTTACGGCATCGATAAAGGTTAGTAAAGATAGTGATGG 3244 |||| || | | || |||||||||||||| |||||| | ||| || | |||||| Sbjct 8214 CACTGGTAATAAGACCCCAGACTTTACGGCATCTATAAAGATATCTAAGGACACTGATGG 8155 Query 3245 GTTCTATTATCTTTCTGGCGATTATTGTCCTGAGTTTGTTGATGATGGTCAGTATTCAAC 3304 || ||||| ||||||| ||||| || |||||| | ||||||||| | ||||| || Sbjct 8154 ATTTTATTACATTTCTGGTGATTACTGCCCTGAGAACTTCGATGATGGTGATTATTCTAC 8095 Query 3305 GCAAACACAAGGTCGTTTCTGTAAGAAGGCTGGTGAGCGTGATGTTATCATTAAGAAGCA 3364 || || || ||| | ||||| ||||| || || || | ||| | ||||| ||||| || Sbjct 8094 TCAGACGCATGGTAGGTTCTGCAAGAAAGCAGGGGAAAGAGATTTCATCATAAAGAAACA 8035 Query 3365 AGCTCATTACGATGGTGATGATGTCATTATCATTTTCAACGTTGACCCAGGGCAAGCAGG 3424 ||| | | || ||||||||||| | ||||| ||| |||||||| || || ||||| Sbjct 8034 GGCTGAGCATGACGGTGATGATGTTACAATCATATTCTCTGTTGACCCTGGTCAGGCAGG 7975 Query 3425 GATAAGTGAGTTCACAACAAGTTCTCGTGAGTTGCTTGCAGAGGGCTTTATCGTCGAGAG 3484 ||| || || | || || | || | || | || || | ||| || || | Sbjct 7974 TATAGCAGAATTTAATACCTCATCAAGACAGCTTATTTCTGATGGTTATATTGTTGAAAA 7915 Query 3485 AGACCCAACACCGGGTAATAAATCCAAACTTACACGCTTCACACCTTTTGCAAAACTTGC 3544 ||| |||||||| ||||| ||||| || || || | ||| | |||||||| || | | Sbjct 7914 AGATCCAACACCAGGTAACAAATCTAAGCTCACGAGATTCTCTCCTTTTGCTCAATTATC 7855 Query 3545 ACAGTCAGGAATGGTTCGTATTGTACGCGACAGTTTTGACGCCAAGACATACGAAGCATT 3604 ||| ||| | || | || || || ||| ||| || || || ||||| | Sbjct 7854 GCAGCAAGGTTTTGTGAGAATAGTTAAAAACTCTTTCGACATTAAAACCTATGAAGCTCT 7795 Query 3605 GATGACAGAGCTTGAGAAATTCAATGG 3631 |||| ||| |||||| ||| |||| Sbjct 7794 TATGAAAGAACTTGAGTCGTTCGATGG 7768 Score = 179 bits (198), Expect = 2e-40 Identities = 445/668 (67%), Gaps = 18/668 (3%) Strand=Plus/Minus Query 5634 TACGAAGTTATTTACGAACCAGATGCAAAAGATGCTCACGGTGAATGGATGTCTGCTGAA 5693 |||||| || | || || || ||| |||||||||||||| ||||||||||||| || Sbjct 5047 TACGAAATTGTCTATGAGCCTAATGTTAAAGATGCTCACGGGGAATGGATGTCTGAAGAG 4988 Query 5694 ACAATCCTTAAGGCTAAGGAGTCTTTTGATAAGCACA---CGAAGCTGGCATTGTTAAAG 5750 |||||| || | | || ||||| || | || | || | ||| |||| Sbjct 4987 ACAATCAGGAAAGGCAGAGATAACTTTGAGAAAAATTTATCGGAA--GGTAATGTCAAAG 4930 Query 5751 AAAATCTCTTCCACATGATTGAGACGGACTCATTCACAATTGAGAAGACTTGGATTCAGG 5810 ||||||||||||| ||| || || || | ||||||||||||||||||||| | Sbjct 4929 AAAATCTCTTCCATCTGACACCAACTGAAGATTTTAGAATTGAGAAGACTTGGATTCAAG 4870 Query 5811 AAGAATTTGATGTGGTGGTTATCGGGACCGAGCAAGTAATCAAGGCTGGCACCTGGGTAG 5870 ||||||||||||| | ||| || || || || ||| ||||| | ||||||| Sbjct 4869 AAGAATTTGATGTCATTGTTGATGGCACAGATCAGAAAATATCAGCTGGGTCATGGGTAG 4810 Query 5871 CTAAAGTTAAATATAACGA--CCCTGTATTATGGGATTTGAAGAAATCCAATGTTGTTGG 5928 |||| || ||||| || | || | | ||||| |||| ||| | |||||| || Sbjct 4809 CTAAGGTAAAATACAAAAATGACCAG--CTTTGGGAACTGAAAAAAGCAGGTGTTGTAGG 4752 Query 5929 TGGTCTGAGTATTCAATGCTCAGGATCAATCGATAAGACTACAGGTGAAATCACAAATGT 5988 ||||| ||||||||||||||||| | || || || || |||||||| ||| | | Sbjct 4751 CGGTCTCAGTATTCAATGCTCAGGGTACAT--ATCTGA-AACTGGTGAAATAACAGGTCT 4695 Query 5989 TGATTTCGGTGTCGAGTATGTTGAGGAAGATGGCGAATGACAATTGCAAAAGCCAAGTCC 6048 | |||| | ||| | | ||||| | || || ||| | ||| ||| Sbjct 4694 TAATTTTGACCCAGAGGAACTAGAGGACTAATGCTAA--ACATCCGTAAA----AAGAAA 4641 Query 6049 ATCAAGGAAAAGGGTATCGCCCTCTGCCACGAGAGTCAAGGGTTTTCTGCAAACCTGCGT 6108 | || || || ||||| || || |||||||| |||||||| || ||||| | Sbjct 4640 TTAAAAGAGAAAGGTATTGCTCTTTGCCACGAATCACAAGGGTTCTCAGCAAATAAAAGA 4581 Query 6109 CCAGTGTCTCTTCTTATGAAGTCTGACCTGCAACCAGAACAGATTACTGAAGACGTTATC 6168 ||||| ||| | | |||||||| || | | || ||| | | || ||||| |||| Sbjct 4580 CCAGTTTCTTTGTTAATGAAGTCAGATATTAAGCCTGAAGAATTAACAGAAGATATTATT 4521 Query 6169 AAGGCATTGAAGCAAGTTACCGTTTCCATGAGTTTCGAAGAGTTCCTGCGTAGATTCTTC 6228 ||| | | || ||||| ||| | | || | || || || || | |||||||| Sbjct 4520 AAGAATCTCCAACAGGTTACAGTTACTGTAAGCATGGAGGAATTTCTTCAGAGATTCTTT 4461 Query 6229 TACATGTGGAGTGATGATGCAGAACTTCTTGCCAAACTTCTGGGCTTTGAAACTGAATTA 6288 |||||| | ||||||||||| | | ||||| | || |||||||| ||| | Sbjct 4460 GGTATGTGGTATTCAGATGCAGAACTGTTGACGAAACTATTAGGTTTTGAAACAGAACTG 4401 Query 6289 GAAAATGA 6296 |||||||| Sbjct 4400 GAAAATGA 4393 >seq93744 Length=597 Score = 111 bits (122), Expect = 1e-19 Identities = 310/468 (66%), Gaps = 7/468 (1%) Strand=Plus/Minus Query 7607 ACTACCATCGCTCGTGTTGAACGTGTTGATGAAGTTGTAACCGACTTCCCGGCTCGTCGT 7666 || || ||||| | |||||||||||||| |||| | | | |||| || |||| Sbjct 464 ACGACTATCGCACAGGTTGAACGTGTTGACGAAGGCGCAGGCCGTATCCCAGCACGTCAG 405 Query 7667 CGTCAGGGTGAACGTAACTACGTTGGTACGGAAAAGGCTCAGGTCAAAAACTTCAACATT 7726 ||| ||||| |||||| | | | | ||| | || | ||| | ||||| Sbjct 404 CGTGGTGGTGAGCGTAACCATCTGGCTGGTGAACGTACCAAGCTGTTGAACCTGAACATC 345 Query 7727 CCGTTCTTCCCACTGGATCGTCAGATCACAGCG-GCAGACGTACAGAACTTCCGCAAATA 7785 ||||||||||| ||||| ||| ||| | || |||||| | ||||||||||| | || Sbjct 344 CCGTTCTTCCCTCTGGACCGTTCTATCG-ACCGTGCAGACATTCAGAACTTCCGTGAGTA 286 Query 7786 CTTCACCGTTGATGCTCCGAAGACTGTAGAAGATGTTGTTGCTCGCGTTGTTAGACGCAT 7845 | | | |||| |||||||| || | | || |||| || | | || || Sbjct 285 CGGTAGTGAGAATGCACCGAAGACCGTTCAGGCTGAGGTTGAGCGTCACATGATGCGTAT 226 Query 7846 CCGTCTGTCTCATGAACAACTGAAAGAAAAAGCAATGCTTCAGGCGATC--ATGGGTAAA 7903 ||||| ||||| ||||| || || ||| | | | | || ||||| Sbjct 225 CCGTCGCAGTCATGGTATCCTGAAGAGCAAGGCGATG-TACGGAAGCTCTGATGGGCCGT 167 Query 7904 TCCTGGGCACCACAGGACCCAACGGCTCAGTACAACTACTTCACCGAGTGGGGTGTTACT 7963 || ||| | || | | || ||||||||||||||| | || |||||||||||| Sbjct 166 TCTTGGTCCCCTGAT-ATCCGGTTTCTCAGTACAACTACTACGACGTTTGGGGTGTTACT 108 Query 7964 CAGCACACTGCAAACATCGACTTCACCGATGTTGCAATCGACCCGTCTGACGTTCTCGAA 8023 ||||| ||||| || | ||||||||| | | || ||||||||| || || | ||| Sbjct 107 CAGCAGACTGCTGACGT-GACTTCACCAAGCTGGCGATCGACCCGATCGAAGTCTTGGAA 49 Query 8024 GCTGAAGCTCGCGCTTACATCATCGATAACGCTGGTGACAACGGTAAC 8071 || |||| ||| ||| ||||||||||| || ||||||| |||| || Sbjct 48 GCAGAAGGTCGTGCTCACATCATCGATTGGGCGGGTGACAGCGGTGAC 1 >seq91943 Length=314 Score = 98.7 bits (108), Expect = 6e-16 Identities = 87/105 (83%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 54636 TGGTGTACGCTTCAGCATTTCATGCCTGAGCATCACCGCTCTCCATGATACAGAGCTGAC 54695 |||| || ||||| ||||| | | || ||||| ||||||||||| |||| ||| | || Sbjct 299 TGGTATATGCTTCTGCATT-CGGGTGTGTGCATCCCCGCTCTCCATTATACGGAGAT-AC 242 Query 54696 TCACCACCATCGAACTGATATGCACACCCATGCTGCAATCATACC 54740 ||||| ||||| ||||||||||| | ||||||||||||||||||| Sbjct 241 TCACCTCCATCAAACTGATATGCTC-CCCATGCTGCAATCATACC 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302645025804100