Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq33108 163 3e-35 seq49372 131 2e-25 seq49234 120 3e-22 seq31280 116 4e-21 seq50823 109 6e-19 seq72596 105 7e-18 seq34305 87.8 2e-12 >seq33108 Length=3479 Score = 163 bits (180), Expect = 3e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 123132 AACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATCCAGAAAAATAT 123191 ||||||||||| ||||| |||||||| || ||||| || || || ||||| || || ||| Sbjct 2804 AACGTTAACGTCCTGCGCCGTGAAACGCTGGAAGACGCCGTGAAACATCCTGAGAAGTAT 2863 Query 123192 CCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAA 123251 |||||||||||||| ||||| || || ||||| || |||||||| || ||||| || ||| Sbjct 2864 CCGCAGCTGACCATTCGTGTTTCCGGGTATGCCGTGCGCTTTAATTCGCTGACGCCTGAA 2923 Query 123252 CAGCAGCGCGACGTTATCGCTCGCACCTTTACTGAGAGTCTATAA 123296 || ||||| ||||| || || || |||||||| || ||| ||||| Sbjct 2924 CAACAGCGTGACGTCATTGCCCGTACCTTTACGGAAAGTTTATAA 2968 >seq49372 Length=1062 Score = 131 bits (144), Expect = 2e-25 Identities = 247/361 (68%), Gaps = 8/361 (2%) Strand=Plus/Minus Query 116747 TATGACCATGATACTATTCATGAAGCCATTGCACTAACAGACCGTCCAGCGTATACATTT 116806 |||||||||||||||||||| ||||| || | || ||| || || |||| Sbjct 635 TATGACCATGATACTATTCACGAAGCGATAAAAGTACTTGACAAACCTGCATATATGAAC 576 Query 116807 TATATGAAAGATGGTTCTGAAGTCATGACCTCACGCGAGAAGTTCGAATCATTACCAGAA 116866 ||||| || ||| | || || ||||| || |||||| || |||| Sbjct 575 TATATTGTGGAAGGTGCAGACGTTATGACAAGTAAAGAAAAGTTCTTTGCA----CAGAG 520 Query 116867 --ATG--GTCAAATTGGCCGGCGTATACGAAGAATCATGTGTACTAGCGTTAGAACGTTC 116922 ||| || ||||| || ||||| |||||| ||||||| || || ||||||||||| Sbjct 519 CGATGAAGTTAAATTATTGGGTGTATATGAAGAAACATGTGTTCTTGCATTAGAACGTTC 460 Query 116923 TCAGATTCCTAATAACTTTGAAATCCATCCACGTGATAGTTTTATGATGGCCCTTGAAAA 116982 || || |||||||| |||||||| |||| ||| | |||||||| | || | | || Sbjct 459 ACAAATCCCTAATAATTTTGAAATTGATCCTCGTCAGAGTTTTATTACTGCTTTAGTTAA 400 Query 116983 GGTCTGTACATCAATCACATCAGGATGGTTCCGTGAGTTCGCTTGGGAAAATTATAGCAA 117042 || |||| || || ||||||||||| | || || ||||||| |||| || | Sbjct 399 AGTGTGTAGTAGTATTACGTCAGGATGGTTTAGAGAATTTTCTTGGGAGAATTTTAATAC 340 Query 117043 AGTAGTAAGTATGTACCAAAGCTTAGGACACGACGATTACGTCAAGCGTTTCAAACAAAA 117102 |||||| | |||||| | | || || | || ||||| | || ||||||||| |||| Sbjct 339 AGTAGTTAATATGTATCGTAAATTTGGCGAAGATGATTATATTAAACGTTTCAAAGAAAA 280 Query 117103 C 117103 | Sbjct 279 C 279 >seq49234 Length=879 Score = 120 bits (132), Expect = 3e-22 Identities = 133/176 (76%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 120495 ATGACTCGTATCAATTTAACACTTGTTTCTGAACTGTCCGACCAACATCTTATGGCTGAG 120554 ||||| ||||||||| | || || ||| | | |||||||||||||||||||| Sbjct 549 ATGACCCGTATCAATCTCGTACCAGTACAAGAATTAGCTGACCAACATCTTATGGCTGAA 490 Query 120555 TATCGTGAATTACCACGCGTATTTGGTGCAGTCCGTAAACATGTTCAAAACGGTAAACGT 120614 || |||||||| ||||| ||||| ||||| || ||||| || || ||| |||||||| Sbjct 489 TACCGTGAATTGCCACGTGTATTCGGTGCTGTTCGTAAGCACGTACAAGCTGGTAAACGA 430 Query 120615 GTAAAGGATTTTAAAATCTCTCCAACATTTATCTTAGGCACAGGTCACGTAACATT 120670 | || |||||||||||| | | || | || ||||| |||||||| || ||||| Sbjct 429 ATCAATGATTTTAAAATCAGTACTACCTACAT-TTAGGTACAGGTCATGTTACATT 375 >seq31280 Length=10079 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42101 GGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAA 42160 ||||||| | ||||| ||| ||| || |||| || || ||||| || || || ||| Sbjct 1550 GGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAGCACTTCCAGACAGCGGTGAAA 1491 Query 42161 TCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCAC 42220 || ||||| || || || | ||||| || || || || || |||||||||||||| Sbjct 1490 TCCTGTTCGCAGGGCGGCGTCCGTGGCGGCGCAGCGACGCTGTTCTATCCGATGTGGCAT 1431 Query 42221 TTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATT 42280 | |||||||| | ||| ||||| |||||||| ||| || ||||| | ||||| | Sbjct 1430 CTGGAAGTAGAAAGCCTGTTAGTCCTGAAAAACAACCGTGGTGTGGAAGGTAACCGCGTA 1371 Query 42281 CGACATATGGACTACGG 42297 || || ||||||||||| Sbjct 1370 CGTCACATGGACTACGG 1354 >seq50823 Length=3276 Score = 109 bits (120), Expect = 6e-19 Identities = 134/182 (74%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 120495 ATGACTCGTATCAATTTAACACTTGTTTCTGAACTGTCCGACCAACATCTTATGGCTGAG 120554 |||||||| || |||||| | ||| ||| || |||| |||||||| |||||||| Sbjct 308 ATGACTCGGATAAATTTAGTTCCGGTTCAGGAATTGGCCGATCAACATCTGATGGCTGAA 249 Query 120555 TATCGTGAATTACCACGCGTATTTGGTGCAGTCCGTAAACATGTTCAAAACGGTAAACGT 120614 ||||||||||||||||| |||||||||||||| | ||||| ||| | || ||| | Sbjct 248 TATCGTGAATTACCACGTGTATTTGGTGCAGTAAGGAAACACGTTGATGCTGGGAAA-AT 190 Query 120615 GTAAAGGATTTTAAAATCTCTCCAACATTTATCTTAGGCACAGGTCACGTAACATTCTTT 120674 | || ||||||||||| | || | ||| | || ||||| || || || || ||| Sbjct 189 ATTAATGATTTTAAAATAAGTAAAAGCTATATTCTTGGAACAGGACATGTTACCTTTTTT 130 Query 120675 TA 120676 || Sbjct 129 TA 128 >seq72596 Length=790 Score = 105 bits (116), Expect = 7e-18 Identities = 179/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 139479 TTTCCTAAACTTGTTATGTTCGTTGAAGAAGGTGTTAATCTTTATAAAGACGATCCGAAC 139538 ||||||||| || | | || || |||| ||||| |||||| | || | ||||| || Sbjct 522 TTTCCTAAAGTTATATTCTTTCTTAAAGATGGTGTAAATCTTAAAGAAAATGATCCTAAT 581 Query 139539 TATGATATTAAGCAGCTTGCGTTAGAATGTGCAAGCAAAAGAATGTATCCTGACATTATT 139598 |||||| | || | | || | || |||| |||||||| ||||| || | || Sbjct 582 TATGATTTAAAAGAACAAGCAATTAAAACTGCATCTAAAAGAATATATCCAGATTTCATA 641 Query 139599 TCGGTTAA---GAATAATAAAGCTATCACCGGCTCA-TCTATTCCTGTTTCTCCAATGGG 139654 ||||| | |||||| |||| | | | || | || ||||| ||| ||||||||| Sbjct 642 TCGGTAGACTTGAATAAAAAAGTGA-CGCATTCTGAATCAATTCCAGTTAGTCCAATGGG 700 Query 139655 TTGTCGTAGTTTCTTGAGTGCATGGAAAGATTCAACTGGAAATGAAATTCTTGACGGTCG 139714 ||||||| |||||| ||| ||||||||||| || ||||||||||| | || ||| | Sbjct 701 TTGTCGTTCTTTCTT-AGTTCATGGAAAGATGAAAATGGAAATGAAAAATTCGATGGTAG 759 Query 139715 TAATAATCTTGGCGT 139729 |||| |||| || Sbjct 760 ATTTAATATTGGTGT 774 >seq34305 Length=2218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 123123 CAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAG-ATGCAGTTAAGCATCC 123181 || |||||||| |||||||| || || |||| | | || | | ||| | | | || Sbjct 759 CAGCATCTGAATGTTAACGTGATGAACCGGGAAA-TGTTGATGGACGCAATGGATAACCC 701 Query 123182 AGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTCT 123241 || |||||||| ||| | |||||||| || || || ||||| |||||||||||||| || Sbjct 700 TGAGAAATATCCTCAGTTAACCATCCGCGTTTCGGGCTATGCCGTTCGCTTTAACTCGCT 641 Query 123242 GACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTAC 123283 || || ||||||| ||||| || | || |||||||| Sbjct 640 CACCAAAGAGCAGCAGCAGGACGTGATTACCCGTACCTTTAC 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539059774028000