Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq100029 262 2e-65 seq78523 176 2e-39 seq56734 159 1e-34 seq39396 136 2e-27 seq43257 114 5e-21 seq59838 96.9 1e-15 >seq100029 Length=517 Score = 262 bits (290), Expect = 2e-65 Identities = 271/355 (76%), Gaps = 0/355 (0%) Strand=Plus/Minus Query 57413 AGCAATTCCCCTTGGGCCATCCATGTACTTTCCGTACTCTTCCGTTAACAACGTGAAGTA 57472 |||||||||| | ||||| || || || || || || | || |||||||| || || | Sbjct 517 AGCAATTCCCTGTCGGCCAGCCCTGGACCTTTCGCACCTTGCCATTAACAACATGCAGCA 458 Query 57473 ATCCCCAGCCAGGTGGTAAATCCTCAATTGAAATAATTCCCGGCTCACTAATAAAGAATC 57532 |||||||||||| |||||||| |||| ||| || |||||||| ||||| ||||||| Sbjct 457 ATCCCCAGCCAGCAGGTAAATCTTCAACGTTAATTATGCCCGGCTCGCTAATGAAGAATC 398 Query 57533 GCCAGTCGCCCATTCCAAGAGACGGATTTTTACGAAAACGCTTTTTTCTATCTGCCAACA 57592 ||||||||||||| |||| | ||| ||| | || |||||||||| || |||| | Sbjct 397 GCCAGTCGCCCATGCCAATATCCGGGTTTAGCCTGAATCGCTTTTTTCGGTCAGCCAGTA 338 Query 57593 AGTCAGCACGAGAACATTTCGCCTCTATCAGGCATGATGCTGAATTTCTGAATCCCATAG 57652 | || | || || ||||| || ||||||||||| || || ||| | |||||||||| Sbjct 337 AATCTGAGCGCGAGCATTTTGCTTCTATCAGGCAAGACGCGTTATTGCGAAATCCCATAG 278 Query 57653 CATCTGGCTGTTCTCCGGTACTGGTTACAGCTATAAAGCGGTCATGAAAACAAACCTTGA 57712 |||||||||| || || || ||||| ||||| ||||| ||||| ||||| || ||||||| Sbjct 277 CATCTGGCTGCTCACCTGTGCTGGTGACAGCAATAAATCGGTCGTGAAAGCAGACCTTGA 218 Query 57713 ACCCGTTGCGCTTAAGGAACTTGTACGCAATCTGACAGAGTTCGCGGTGTGTTAA 57767 | ||||| ||| | ||||| ||| |||||||| || || | | |||||||| Sbjct 217 ATCCGTTACGCCTGAGGAATGAGTAAGCAATCTGGCAAAGCTGGTTATGTGTTAA 163 >seq78523 Length=652 Score = 176 bits (194), Expect = 2e-39 Identities = 300/426 (70%), Gaps = 7/426 (2%) Strand=Plus/Minus Query 891 TGCTGATAACTGAGTAGATCATTGCCTCCGATATATCCTTAATCCTTATTCCCTCGAAAT 950 |||||| | | ||| ||| ||||||| | |||||||| | | | |||||| ||| Sbjct 432 TGCTGACCGCGGCGTAAATCTTTGCCTCAGTAATATCCTTCAGCAA-ACTCCCTC-AAAC 375 Query 951 GCTCAATCCAGAATGCGATTCTGGATTTATCGGAATCGATGGATTTCTTGTCGGCTTTTT 1010 || || ||||||| | || | | ||| || | ||| | |||| |||| || ||| Sbjct 374 GCATAAGCCAGAATCCAATCCGGCCTTTGTCCGCATCCAGAGATTA-TTGTGCGCCTTT- 317 Query 1011 CCTCAAGCCATCTCAGGCAGGCTTCTTCGAAAGTGACATCTGGCATATCCCCCAGTCTGT 1070 | || ||||| | ||| ||||| ||||| || || || || || | |||||| |||| | Sbjct 316 CTTCCAGCCAGCGCAGACAGGCCTCTTC-AACGTCACGTCCGGGA-ATCCCCGAGTCGCT 259 Query 1071 CTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTGCCGCTTGTCCT 1130 ||| ||||||||| ||||| |||| | |||||||||||||| || ||| ||||| Sbjct 258 CTATTCGCCAGAGCTCTGCCTTTCTCCGATCGTGCAACTCCTGTGCCTGCTTTCGGTCCT 199 Query 1131 TTGTGCCAAGAGACTCCTTAATTCGCTTCCCGCCCGGGAGCGAGTACGAGGCGTACCATA 1190 |||||||||||| || ||||| |||||||| || | || ||| | ||||| | Sbjct 198 CTGTGCCAAGAGATTCTTTAATGCGCTTCCCTCCTGACGTCGTGTAACTCCCATACCAGA 139 Query 1191 TTTCACCTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCCATCACCCGCGCTCAC 1250 |||||||||||||| ||||| | ||| ||| | || |||| |||||||||| Sbjct 138 CGGAACCTCTGCGGAAGATCGACATGATTTTTTCTCCCATGTG-CATCTGCCGCGCTCAC 80 Query 1251 CTGGACAGTATGCAGCGGTGAATGAAGTGCTGCAATGCAGGCTTGCCGGGTTGTGAGATA 1310 |||||| |||| || || || || ||||| || || || || ||| ||| || Sbjct 79 GGTGACAGTGTGCATTGGATTATTGAGAGCGGCAATACATGCCTGGCGCGTTAAGAGGTA 20 Query 1311 AGGTGA 1316 ||||| Sbjct 19 GGGTGA 14 >seq56734 Length=385 Score = 159 bits (176), Expect = 1e-34 Identities = 208/288 (72%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 94 ATTTGGGACATCGTCACTCAATATGTCGTCAATTTTCCTCGCGTGCTCTGTCAAATGATT 153 ||||| | | | ||||| ||| | |||||| || | ||| || || |||| || || Sbjct 305 ATTTGTGTCGTTGTCACCCAAAAGAGAGTCAATCTTGCGCGCATGTTCGGTCAGGTGGTT 246 Query 154 AGGTGCAAGGTGTGCGTACCTACGCACCATTTCGATAGACTCCCAGCCGCCCATTTCCTG 213 |||||| |||||||| ||||| || ||||||||||| ||||| || ||||||||||| Sbjct 245 AGGTGCCAGGTGTGCATACCTGCGTACCATTTCGATGCTTTCCCATCCTCCCATTTCCTG 186 Query 214 AAGTACTGACAGCGGTACACCTGACTGAATTAACCAACTGGCCCAAGTGTGGCGGAGGTC 273 | | | || || || || |||| |||||| | ||| || ||||| || || || | ||| Sbjct 185 CAATGCCGAAAGTGGAACGCCTGCCTGAATCAGCCAGCTTGCCCAGGTATGACGTAAGTC 126 Query 274 ATGAAAACGGAAATTTTCAATTCCTGCCCGACGACATGCTGTTAACCACGATGTGTTATA 333 |||||||||||||| ||||| |||||||| | || | ||||| ||||||| Sbjct 125 ATGAAAACGGAAATCCTCAATGCCTGCCCGCTTGAGTCCTATCCGCCACGCCGTGTTATC 66 Query 334 GTCCAGGCGCATCTTTCTGATGCTTGGTGTCATTGTCCCGTCAGGCCT 381 || |||||| || |||| ||| ||| | || ||||| || || Sbjct 65 ATCACAGCGCATTTTCCTGACAGATGGCGTCTTGGTGCCGTCTGGTCT 18 >seq39396 Length=387 Score = 136 bits (150), Expect = 2e-27 Identities = 143/184 (78%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 120 CGTCAATTTTCCTCGCGTGCTCTGTCAAATGATTAGGTGCAAGGTGTGCGTACCTACGCA 179 |||||||||| | | |||| |||| || |||||||| |||||||| ||||| || | Sbjct 162 CGTCAATTTTGCGTACAAGCTCAGTCAGGTGGTTAGGTGCCAGGTGTGCATACCTGCGTA 221 Query 180 CCATTTCGATAGACTCCCAGCCGCCCATTTCCTGAAGTACTGACAGCGGTACACCTGACT 239 ||||| | || | ||||| ||||||||| |||| | | | || || || ||||||| || Sbjct 222 CCATT-CTAT-GCTTCCCATCCGCCCATT-CCTGTAATGCAGAAAGTGGAACACCTGCCT 278 Query 240 GAATTAACCAACTGGCCCAAGTGTGGCGGAGGTCATGAAAACGGAAATTTTCAATTCCTG 299 |||| | ||| || ||||| || || || | ||||||||||||||||| ||||| |||| Sbjct 279 GAATAAGCCAGCTTGCCCAGGTATGCCGTAAGTCATGAAAACGGAAATCCTCAATGCCTG 338 Query 300 CCCG 303 |||| Sbjct 339 CCCG 342 >seq43257 Length=1618 Score = 114 bits (126), Expect = 5e-21 Identities = 174/244 (71%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 25761 GTGCCACTGACTGAACCCCAGAAAGCGGGTATTGCGTCATTCTGTCCTTACAACATTGGC 25820 || |||||||| ||||| ||||| | || || |||||||||||||| | ||||||||| Sbjct 850 GTTCCACTGACCGAACCGCAGAAGGTTGGCATAGCGTCATTCTGTCCGTGGAACATTGGC 791 Query 25821 CCCGGTAAGTGTTTCCCGTCGACGTTTTAT---AAACGAATTAATGCAGGTGATCGAAAA 25877 |||||||| || | || || ||||| || |||| || | ||||| ||||| Sbjct 790 CCCGGTAAATGCCTGCCATCAACGTTCTACCGGAAACTAA---ACGCAGGCGATCGCCTG 734 Query 25878 GGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATCCGC 25937 ||||| || | || ||| | ||||| ||||| || | ||| ||||| || ||| Sbjct 733 GGTGCATGTGCAGAGATAAAGCGCTGGATATTCGACGGCGGGAAAGATTGCCGCATTCGC 674 Query 25938 TCAAATAATTGCTACGGTCAGGT-ATCAAGACGTGACCAGGAGAGTGCGCTGTCATGCTG 25996 || ||| || ||||| || || ||| | ||||||||||| | ||| ||||||| Sbjct 673 TCTAATGGCTGTTACGGGCAAGTTATCC-GCCGTGACCAGGAATCAGAGCTCACATGCTG 615 Query 25997 GGGT 26000 |||| Sbjct 614 GGGT 611 >seq59838 Length=649 Score = 96.9 bits (106), Expect = 1e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 85 GTGGGACAAATTTGGGACATCGTCACTCAATA-TGTCGTCAATTTTCCTCGCGTGCTCTG 143 |||||||| |||||||||| || | ||| | | ||||||||| |||||| ||||||| Sbjct 622 GTGGGACAGATTTGGGACA-CGACTGCCAAAAATCGCGTCAATTTGCCTCGCATGCTCTG 564 Query 144 TCAAATGATTAGGTGCAAGGTGTGCGTACCTACGCACCATTTCGATAGACTCCCAGCCGC 203 ||| |||||| ||||| ||||| || || | | ||||||||||| ||| || |||| Sbjct 563 TCAGATGATTCGGTGCCAGGTGAGCATAGCGCTGAACCATTTCGATGCTCTCTCATCCGC 504 Query 204 CCATTTC 210 |||| || Sbjct 503 CCATCTC 497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194377171678200