Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq19617 114 1e-20 seq43510 104 2e-17 >seq19617 Length=1959 Score = 114 bits (126), Expect = 1e-20 Identities = 197/279 (71%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || || ||||| ||||| | |||| || || || || || ||||| | || || | Sbjct 1629 GGCGTCAAGATATGGGATGGAAACGGCTCACGCGAGTTCCTAGACAACCTCGGCCTCACG 1688 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 || |||| |||||| |||| || || ||||||||||| ||| | |||||||| || Sbjct 1689 CACCGCGAGGTAGGCGACCTGGGACCCGTGTACGGGTTCCAATGGCGGCACTTTGGCGCA 1748 Query 34442 GAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACG 34499 ||||| || || || ||| ||||||| |||| |||| | || ||||| |||| ||| Sbjct 1749 GAGTA-CGTGGATGCAAAGACGGACTACACGGGCAAGGGCGTCGATCAGCTCGCAG-ACG 1806 Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA-- 34557 | || |||| | ||| || || | ||| || ||||| | ||| |||| ||||| Sbjct 1807 TTATAGACAAGATCAAGAACAAGCCATACGACCGACGGATCATCATGAGCGCATGGAACG 1866 Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCA 34596 ||||| ||| | | ||| ||||| | || |||||||| Sbjct 1867 CCCGA--GATTTACATCTCATGGCTTTACCACCGTGCCA 1903 Score = 114 bits (126), Expect = 1e-20 Identities = 197/279 (71%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 6749 TGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG--TTCCACGCGCACATCACGA 6806 |||||||| || | ||||| ||| | | ||| ||||| ||||| |||| ||| | || Sbjct 1903 TGGCACGGTGGTAAAGCCATGAGATGTAAATC--TCGGGCGTTCCATGCGCTCATGATGA 1846 Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGCT 6865 ||| || ||| | || || ||| | |||| || |||| |||| ||||| || | Sbjct 1845 TCCGTCGGTCGTATGGCTTGTTCTTGATCTTGTCTATAACGT-CTGCGAGCTGATCGACG 1787 Query 6866 CCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTG 6924 |||| |||| ||||||| ||| || || || ||||| || |||||||| | ||| || Sbjct 1786 CCCTTGCCCGTGTAGTCCGTCTTTGCATCCACG-TACTCTGCGCCAAAGTGCCGCCATTG 1728 Query 6925 GAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAG 6984 ||||||||| || || |||| |||||| |||| || | || || | ||||| || Sbjct 1727 GAACCCGTACACGGGTCCCAGGTCGCCTACCTCGCGGTGCGTGAGGCCGAGGTTGTCTAG 1668 Query 6985 AAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 || || || || |||| | ||||| ||||| || || Sbjct 1667 GAACTCGCGTGAGCCGTTTCCATCCCATATCTTGACGCC 1629 >seq43510 Length=3912 Score = 104 bits (114), Expect = 2e-17 Identities = 215/316 (68%), Gaps = 3/316 (1%) Strand=Plus/Plus Query 6548 TCGATGTGGTTC-AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTC-CCCAGGAA 6605 |||| |||||| || || | |||||||| |||| ||| ||||| | || |||| | Sbjct 576 TCGAAGTGGTTGGAGTTACAGGTGCGCATCGCCCAGCGTGTGCACGAAATCGCCCACGC- 634 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 ||| || | | || || | ||||| || ||||| ||||| || || |||||||||| Sbjct 635 CCAGGCCGGTGGCCTGCGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACG 694 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 |||| || | ||||| || || || || ||||||||| |||| || | Sbjct 695 GCACGCCCAGGAAAATGTCGCCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGA 754 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 | |||||||| ||| | ||| |||||||||| ||||||||| | || || || | Sbjct 755 CCACGTAGAACTGGAACAGGCTGTGGCACGGCATCAGCGCCATCTGCGGCAGTTCGGCCA 814 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 |||||| |||| ||||| | || | ||| || || ||||| | ||| | || Sbjct 815 CGTTCCAGGCGCTGATCACCAGCCGCCGCGAATCCGGATTGCGCTTGATCTCGTCCACCA 874 Query 6846 CGTACTGCAGCTGGTC 6861 |||||| |||||| Sbjct 875 GCCACTGCATCTGGTC 890 Score = 104 bits (114), Expect = 2e-17 Identities = 215/316 (68%), Gaps = 3/316 (1%) Strand=Plus/Minus Query 34484 GACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTG 34543 |||||| |||||| || | ||| | ||||| || || ||| | || | ||| Sbjct 890 GACCAGATGCAGTGGCTGGTGGACGAGATCAAGCGCAATCCGGATTCGCGGCGGCTGGTG 831 Query 34544 ATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTC 34603 || |||| |||||| | || || || | ||||||||| |||||||||| ||| Sbjct 830 ATCAGCGCCTGGAACGTGGCCGAACTGCCGCAGATGGCGCTGATGCCGTGCCACAGCCTG 771 Query 34604 TGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGAC 34663 | ||| |||||||| | | || |||| ||||||||| || || || || ||| Sbjct 770 TTCCAGTTCTACGTGGTCGACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGGCGAC 711 Query 34664 ATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCT 34723 || | || |||||||||||||| || || ||||| ||||| || ||||| | || Sbjct 710 ATTTTCCTGGGCGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGGTGGCG 651 Query 34724 CATGTCGTGGGGTTGGTTCCTGGG-GAGCTGGTGCATACGTTGGGGGATGCGCATATCTA 34782 || | | || ||| | |||| || | ||||| ||| |||| |||||||| | || Sbjct 650 CAGGCCACCGGCCTGG-GCGTGGGCGATTTCGTGCACACGCTGGGCGATGCGCACCTGTA 592 Query 34783 CCT-GAACCACATCGA 34797 || |||||| |||| Sbjct 591 ACTCCAACCACTTCGA 576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447532292616000