Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq28556 168 2e-36 seq29103 131 4e-25 seq30797 107 4e-18 seq97857 96.9 8e-15 >seq28556 Length=388 Score = 168 bits (186), Expect = 2e-36 Identities = 171/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| ||||| | |||||| || ||||| ||||| ||||| ||||| | ||||| Sbjct 61 ACGAAGTCGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAGAGGGT 120 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||||||||| || |||||||| || || || ||||| ||||||| || Sbjct 121 ACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCC 180 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| |||||||||||||| || || || || ||||| || || || || || || Sbjct 181 TTCTTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGAAGACTCTACTTCTAG 240 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 241 CGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATT 283 >seq29103 Length=1863 Score = 131 bits (144), Expect = 4e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 |||| || | || ||||| ||||| ||||| || || ||||| || | || || || | Sbjct 1082 CAAGTGGACGCGTCGACTCCTTTTGAATGTTGTAGTCTGCAAGAGTGCGGCCGTCCTCAA 1141 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 ||||||| || || ||||| ||||| || ||||| || |||| || ||||||||||||| Sbjct 1142 GCTGCTT-CCGGC-AAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGA 1199 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 |||| || || || ||||| ||||| ||| || ||||| || ||||| ||||| | Sbjct 1200 TCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGC 1259 Query 211087 CCGTGAGAGTCTTTACAAA 211105 |||| || ||||| || || Sbjct 1260 CCGTCAGGGTCTTCACGAA 1278 >seq30797 Length=220 Score = 107 bits (118), Expect = 4e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 210974 GCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTG 211033 ||| || ||||| || || || |||||||| |||| |||||||||||||| ||||| Sbjct 220 GCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCGA 161 Query 211034 TTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || || || ||||||||||| ||| || ||||| |||||||| |||||||| || | Sbjct 160 CTTTACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGAGTGATGGTCTTTCCAGTCAA 101 Query 211094 AGTCTTTAC 211102 |||||| || Sbjct 100 AGTCTTGAC 92 >seq97857 Length=911 Score = 96.9 bits (106), Expect = 8e-15 Identities = 193/277 (70%), Gaps = 13/277 (5%) Strand=Plus/Plus Query 178094 TTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCC 178150 ||||| |||||||| || | ||||| || || ||||| |||||||| ||| || Sbjct 403 TTCTTCTGGTTGCT-TTGCGGTTGCAA---GCGTCCTTGTAAAGCATGAAGGG-ATTACC 457 Query 178151 AC-CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 | ||||| ||||||| |||| ||| || | | ||| |||||| || || |||| Sbjct 458 AGTCTCAGTTTGAGCCTCGAGGATGGCATACGA--GCTTCTGGGCGCGAACGGTCTCACG 515 Query 178210 GGCTTT-TCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACAT 178268 |||| | ||| ||||| || ||| |||||| |||| || || || ||||| | Sbjct 516 ACCTTTGTTCTTT-TTCTCATAACTTTCGTAGAGGGCCTCAAACTCATCACCGTAGACGT 574 Query 178269 CATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTC 178328 | ||||||| ||| ||| ||||| || | ||| |||||| || | || | || | Sbjct 575 CCGCGAGACCAGGACACTCGTTGGGACACATCAGAGTCCACTCCCCATTCTCTTGGACAC 634 Query 178329 GTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 | ||||||||||| || | | |||| | ||| ||||| Sbjct 635 GCTTCATGAAGAGATCCGGGATCCACAGGGCGTAGAA 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157216831959500