Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq28556 100 2e-16 seq2641 87.8 1e-12 >seq28556 Length=388 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || |||||||| || || || ||||| || ||||| || || | Sbjct 283 AATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACGCTAGAAGTAGAGTCTTC 224 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| || |||| ||| | || | || | | ||||||||||| | || || || | Sbjct 223 GGATACCATTGACAATGTCAAGTCGAAGA-TCCAGGACAAAGAAGGCATTCCTCCGGACC 165 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || || ||||| || || |||||||| | || || | ||||||| Sbjct 164 AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTCTCTGATTACA 105 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| ||||| || Sbjct 104 ACATTCAAAAGGAGTCTAC 86 >seq2641 Length=263 Score = 87.8 bits (96), Expect = 1e-12 Identities = 133/187 (71%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693 || || || || ||||| || |||||||| || |||| ||| | || ||| | ||||| Sbjct 45 ACCGGCAAGACTATCACCCTTGAAGTTGAATCTTCGGATACTATCGACAATGTCAAAACC 104 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 ||| || ||||| || ||| | || || |||||||| || | || ||||| || || Sbjct 105 AAA--TTCAAGACAAGGAGGGTATTCCCCCCGATCAACAACGACTCATCTTTGCTGGTAA 162 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 || ||||||| | || || | | |||||||||||| || ||||| || || | || Sbjct 163 GCAGTTGGAAGATGGTCGAACCCTTGCCGATTACAACATTCAGAAAGAATCTACTCTGCA 222 Query 23814 TTTAGTT 23820 | | ||| Sbjct 223 TCTGGTT 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337472830192400