Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2641 154 4e-32 seq284 116 9e-21 seq29103 113 1e-19 seq115668 104 6e-17 seq39191 104 6e-17 seq42306 100 7e-16 seq30797 100 7e-16 seq9272 98.7 2e-15 seq6010 89.7 1e-12 seq6412 86.0 1e-11 seq2101 86.0 1e-11 >seq2641 Length=263 Score = 154 bits (170), Expect = 4e-32 Identities = 156/202 (77%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || || || || ||||| |||||||| || | ||||||||||| | || Sbjct 241 ACGAAGTCGAAGAACCAGATGCAGAGTAGATTCTTTCTGAATGTTGTAATCGGCAAGGGT 182 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | |||||| ||||| ||||| ||||||||||| ||||| |||||||| Sbjct 181 TCGACCATCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGTTGATCGGGGGGAATACC 122 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| || || || ||| ||||| || || || | ||| || || | Sbjct 121 CTCCTTGTCTTGAAT-TTGGTTTTGACATTGTCGATAGTATCCGAAGATTCAACTTCAAG 63 Query 225672 CGTGATCGTCTTGCCCGTCAAA 225693 ||||| |||||||| |||||| Sbjct 62 GGTGATAGTCTTGCCGGTCAAA 41 >seq284 Length=10114 Score = 116 bits (128), Expect = 9e-21 Identities = 200/287 (70%), Gaps = 5/287 (2%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGA 7498 ||| |||||| ||||||||| | || || || ||||| ||||||| ||| || | Sbjct 6049 AACATTATATCTAATATTTGCTTTATTCTCAGG-ATTATTAGGTACTGCATTCTCAGTAT 5991 Query 7499 TTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 | ||||| ||||||||| || || || ||| || | |||| |||||| | Sbjct 5990 TAATAAGATTAGAATTAAGTGGACCAGGAGTACAA---TTCATATCAAATAACCAACTAT 5934 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | || ||| |||| || || ||||| | ||||| |||||| | |||||||| | Sbjct 5933 ATAATAGTATCGTTACAGCTCACGCCTTATTAATGATATTCTTTATGGTTATGCCTGCCT 5874 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | || || || ||||| || | | | || |||||| | || | ||||||||||||| Sbjct 5873 TAATCGGAGGATTCGGTAACTTCCTAATGCCATTAATGGTAGGAGGACCTGATATGGCTT 5814 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 | || || | || ||||||||||| |||||| |||| ||| |||| Sbjct 5813 TCCCTAGATTAAATAATATAAGTTTCTGATTATTACCTCCTAGCTTA 5767 >seq29103 Length=1863 Score = 113 bits (124), Expect = 1e-19 Identities = 154/210 (73%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGA-GAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 || || | ||||| | || || || ||||| | ||||| || || | ||| | || || Sbjct 1077 AGAACCAAGTGGACGCGTCGACTCCTTTTGAATGTTGTAGTCTGCAAGAGTGCGGCCGTC 1136 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||||| || ||||| || || || ||||| || ||||| || |||||||| Sbjct 1137 CTCAAGCTGCTTCCG-GC-AAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 1194 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||||| ||||| |||| || || || | ||||| || Sbjct 1195 CTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGT 1254 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTG 225710 ||||||||||| || || | ||| ||||| Sbjct 1255 CTTGCCCGTCAGGGTCTTCACGAA-ACTTG 1283 >seq115668 Length=703 Score = 104 bits (114), Expect = 6e-17 Identities = 133/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 7545 TAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTT 7604 ||||| ||| | || || || ||| |||| ||||| || |||| ||||| |||| Sbjct 364 TAATAATCAATTATATAATGTAATTGTTACAATTCATGCTTTCATTATAATTTTTTTTTA 305 Query 7605 TGT-TATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTG 7663 | ||| || || | || || || || ||||||||||| ||||| |||| || ||| Sbjct 304 TAACTATACCAATTGTAATTGGAGGATTTGGAAATTGATTAATTCCTATAATAATAGGTT 245 Query 7664 CTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCT 7723 ||| ||||| |||||||| | | || ||||| || |||||||||||||| ||||| | Sbjct 244 GTCCAGATATATCTTTTCCACGATTAAATAATATTAGATTTTGATTACTACCACCTTCAT 185 Query 7724 TA 7725 || Sbjct 184 TA 183 >seq39191 Length=1123 Score = 104 bits (114), Expect = 6e-17 Identities = 93/113 (82%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 178 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 120 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||||| ||||||| ||||||||||| |||| ||||| || |||| ||||| Sbjct 119 CAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCAATGCCGCGTGA 67 >seq42306 Length=487 Score = 100 bits (110), Expect = 7e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | | Sbjct 381 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 322 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG-AATATTTACGCG 7855 ||||| || |||||||||| ||||||||| |||| | | |||| || | || ||||| Sbjct 321 CGTCAATTCATTTGAGTTTT-ACCTTGCGGCCGTACTCCCCAGGCGGTCAACTTCACGCG 263 Query 7856 TTAGCTT 7862 ||||||| Sbjct 262 TTAGCTT 256 >seq30797 Length=220 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||| || || || ||||| || ||||| ||||||||||| || ||||| | Sbjct 219 CCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCGAC 160 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||||||||| |||| ||||| || | ||||| ||||| || |||||| Sbjct 159 TTTACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGAGTGATGGTCTTTCCAGTCAAA 100 Query 225694 GTTTT 225698 || || Sbjct 99 GTCTT 95 >seq9272 Length=831 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/126 (78%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | | Sbjct 551 GGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 610 Query 7797 CGTCAGTTTC-TTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTACGCG 7855 ||||| ||| |||||||||||||||||||| |||| | | |||| | || ||||| Sbjct 611 CGTCAACTTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGTCGACTTAACGCG 670 Query 7856 TTAGCT 7861 |||||| Sbjct 671 TTAGCT 676 >seq6010 Length=1125 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| |||||||| |||| ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 926 TGAGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCA-GACTCCTACGGGAGGCAG 984 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| |||||||||||||||| ||||| || Sbjct 985 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 1024 >seq6412 Length=1091 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 7567 ATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGC 7626 ||| | || || || || || | || |||||||||||||| ||||| || | |||| Sbjct 356 ATTGTAACAGCCCACGCGTTCATAATAATTTTCTTTTTTGTAATGCCAGTAGCGGTAGGA 415 Query 7627 GGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGG 7686 || || || |||| | ||| |||| | ||||| || |||||||| ||||| ||| Sbjct 416 GGATTTGGGAATTATCTATGTCCGGTAATAGTAGGTGCACCGGATATGGCCTTTCCGAGG 475 Query 7687 CTTAACAATATAAGTTTTTGATTACTA 7713 || || || || ||||||||| ||||| Sbjct 476 CTGAATAACATTAGTTTTTGACTACTA 502 >seq2101 Length=2258 Score = 86.0 bits (94), Expect = 1e-11 Identities = 194/289 (67%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTC-TATGATTAT 7502 ||||||||| || | || | || || | || ||||| ||| || ||| || || Sbjct 2054 TTATATTTAGTACTAGGATTAGTGTCAAGTTTGATGGGTACATCATTATCCTAT-ATAAT 1996 Query 7503 AAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAA 7562 | |||||||| || | | ||| || | | ||| |||||| |||||||| || Sbjct 1995 ACGGTTAGAACTATCAGGTCCAAGTAGCACATTCTTGTCAGGTAATGCTCAACTTTATAA 1936 Query 7563 CGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622 || |||| ||| |||||| || | ||||| |||| |||||| ||||| | | | Sbjct 1935 TGTGGTTATAACGATGCATGCTTTATTAATGATATTCTATTTTGTAATGCCAACTTTATT 1876 Query 7623 AGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCC 7682 || || ||| || | || || || |||||| | ||| ||||||||||||| || Sbjct 1875 GGGAACTTACGGTAACTACTTTGTACCCTTAATGTTAGGTATAGCTGATATGGCTTTCCC 1816 Query 7683 AAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 || | |||||||| ||||| || |||| || || ||||| ||| Sbjct 1815 TAGATTAAACAATATTAGTTTGTGGCTACTTTTCCCATCATTATTACTA 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190540306428200