Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq43510 109 4e-19 seq2347 87.8 1e-12 seq60516 82.4 6e-11 >seq43510 Length=3912 Score = 109 bits (120), Expect = 4e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 29652 GTTCCACGTGGTCA-AGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGT 29710 |||| | ||||| || || | ||| ||||| ||||| ||||| || || || ||| Sbjct 574 GTTCGAAGTGGTTGGAGTTACAGGTGCGCATCGCCCAGCGTGTGCACGAAATCGCCCACG 633 Query 29711 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 29770 | || |||||| | || |||| ||||| || || || | ||||||||||||||| || Sbjct 634 CCCAGGCCGGTGGCCTGCGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAC 693 Query 29771 GGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCG 29830 ||||| || || ||||| || | |||||| |||||||| ||||| |||||| Sbjct 694 GGCACGCCCAGGAAAATGTCGCCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCG 753 Query 29831 CTCACGTAAAACTGACACATGGCATGGCACGG 29862 |||||| ||||| ||| | |||||||| Sbjct 754 ACCACGTAGAACTGGAACAGGCTGTGGCACGG 785 >seq2347 Length=4848 Score = 87.8 bits (96), Expect = 1e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 29699 AACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTG 29758 || || ||||| | ||||||||||| || |||| ||| || || || | |||||| Sbjct 1528 AATTCGCCCGGCTGCAGCCCGGTGACCTGGGCCACCATCAGGGTCAGCAGCGCATAGCTG 1587 Query 29759 GCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAG 29818 |||||||| |||||||| ||||| ||||| | || | ||| || |||||||| Sbjct 1588 GCGATGTTGAAGGGCACGCCGAGGAAGATGTCGGCGGAGCGCTGATACAGCTGGCAGCTC 1647 Query 29819 AGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || || ||| || || ||||| ||| ||||||||||| || || ||||| Sbjct 1648 AGGCGACCATCGGCGACATAGAACTGGAACAGCGCATGGCACGGCGGCAGCGCCAT 1703 >seq60516 Length=573 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 29752 GTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTG 29811 ||||||||||||||| || ||||| || || ||||| || | |||||| ||||| Sbjct 573 GTAGCTGGCGATGTTGAACGGCACGCCCAGGAAAATGTCGCCGCTGCGCTGGTACAGCTG 514 Query 29812 GCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGC 29871 ||| ||||| |||||| || || ||||| ||| ||||||||||| || ||||| Sbjct 513 GCAGCTGAGCTTGCCGTCGGCGACATAGAACTGGAACAGCGCATGGCACGGCGGCAGGGC 454 Query 29872 CAT 29874 ||| Sbjct 453 CAT 451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405518200145800