Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq19617 140 2e-28 seq43510 86.0 5e-12 >seq19617 Length=1959 Score = 140 bits (154), Expect = 2e-28 Identities = 196/275 (71%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 27349 TGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATG 27408 |||||||| || | ||||||||| || ||| || |||||| |||| || |||||| Sbjct 1903 TGGCACGGTGGTAAAGCCATGAGATGTAAATCTCGGGCGTTCCATGCGCTCATGATGATC 1844 Query 27409 CGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCC 27468 || | ||| | ||| |||||| |||| ||| | ||| | |||||||| || ||| Sbjct 1843 CGTCGGTCGTATGGCTTGTTCTTGATCTTGTCTATAACGTCTGCGAGCTGATCGACGCCC 1784 Query 27469 ATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAAC 27528 | |||| |||||| | | ||| ||||||||| || || |||| |||||||||| Sbjct 1783 TTGCCCGTGTAGTCCGTCTTTGCATCCACGTACTCTGCGCCAAAGTGCCGCCATTGGAAC 1724 Query 27529 CCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAG 27588 |||||||| ||||||||||| || | || | |||| || ||| ||||| | || Sbjct 1723 CCGTACACGGGTCCCAGGTCGCCTACCTCGCGGTGCGTGAGGCCGAGGTTGTCTAGGAAC 1664 Query 27589 TCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 27623 || | || ||||| | ||||| ||||| || || Sbjct 1663 TCGCGTGAGCCGTTTCCATCCCATATCTTGACGCC 1629 >seq43510 Length=3912 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27160 AGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 27219 || || | ||| || || ||||| ||||| || || || ||| | || |||||| | Sbjct 589 AGTTACAGGTGCGCATCGCCCAGCGTGTGCACGAAATCGCCCACGCCCAGGCCGGTGGCC 648 Query 27220 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279 || |||| ||||| || || || | ||||||||||||||| || || || || || Sbjct 649 TGCGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGGAAA 708 Query 27280 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGA 27339 ||||| || | |||||| ||||| || ||||| || ||| ||||| ||||| Sbjct 709 ATGTCGCCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGACCACGTAGAACTGG 768 Query 27340 CATATGGCGTGGCACGG 27356 | | | ||||||||| Sbjct 769 AACAGGCTGTGGCACGG 785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368920411019300