Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_030908.1 Length=36938 Score E Sequences producing significant alignments: (Bits) Value seq74251 165 2e-36 seq98912 104 6e-18 >seq74251 Length=708 Score = 165 bits (182), Expect = 2e-36 Identities = 326/470 (69%), Gaps = 28/470 (6%) Strand=Plus/Minus Query 3263 CATGAAATCAAGGCACTGCGCCCGTTCATTCGCCGC--GACTTCACCAAGCTACTCCCGA 3320 || ||| ||||||| |||| || ||| || ||| ||| || || || |||| Sbjct 684 CAGGAACTCAAGGCCCTGCAACCTTTCCGCCGACGCTCGAC--CAAAAACCTGTTCCCCG 627 Query 3321 CCGACGTCTATTCCTGCG-ACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCAC 3379 ||||||| | | ||| ||||||||| ||||||||||||| || |||| || Sbjct 626 GGGACGTCT-TCACGGCGGACGGCCACAAGTTCGACGCCGAGATCATCAACCCTCTGACG 568 Query 3380 GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTCCG 3439 |||| ||| | | | |||||||||||||| | |||||| || ||||| || | | Sbjct 567 GGCCAGCCGTACAGACCGGAAATCACCACGGTTATCGACGTCGCCACCCGGCGCGTAGTG 508 Query 3440 GGATGGTCCACCGGCCTGGCCGAGTCGGCCTTGGTGGTGGTCGATGCCCTGCGCGACGCC 3499 || || |||| ||||||||||||| | | ||| | || | |||||| |||||| Sbjct 507 GGTATTTCGGTCGGCGAGGCCGAGTCGGCCATCGGTGTGCTGGACG-CCTGCGTGACGCC 449 Query 3500 TGCACCAAGGGCG-GCATTCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTACGTCAA 3558 | || || |||| || | |||||||||||||| || ||||||| || ||| Sbjct 448 ATC----CGGTCGTGCATGTTCGCTGTGTTCTACGTGGACAATGGTTCGGGCTTCGCCAA 393 Query 3559 CCACATGATGCGCGACGAAGCGGTCGGCCTTATGGGCCGCCTGGGCATCGA-TATGAAGA 3617 ||| ||||||| ||||| ||| |||||||||| ||| |||| | Sbjct 392 TGACACAGTGCGCGA------GGTCG------TGGACCGCCTGGGCGGCGACCATGACGC 345 Query 3618 ACAGCCTGCCCTACAACAGCCAGGCGCG-GGGCGTGATCGAGCGCGTTCACCAGAGCCTG 3676 || |||||||||||||||||||| || || | || ||||||| | ||||||| | | Sbjct 344 ACTCGCTGCCCTACAACAGCCAGGCACGCGGTCCTG-TCGAGCGAG-CCACCAGACCATT 287 Query 3677 TGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGA 3726 ||| | || |||||| | ||| || ||||||||||||| |||||||| Sbjct 286 TGGGTCAATGCGGCCAAGAAGCTGACCAGCTACATCGGCGCAGACATGGA 237 >seq98912 Length=625 Score = 104 bits (114), Expect = 6e-18 Identities = 222/328 (68%), Gaps = 14/328 (4%) Strand=Plus/Plus Query 9769 AAAATCCACATCGCCAAGACCCAGCTCGGCATGGACGATGACACCTATCGCGCATTGCTC 9828 || |||||| | ||||||| |||| | |||||| || |||| |||||| || ||||| Sbjct 173 AAGATCCACGTTGCCAAGAAAGAGCTAGCCATGGATGACGACAGCTATCGAGCGATGCTC 232 Query 9829 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGGTCGATCAGGTG 9888 || ||||| || || ||| ||| | ||||| | || ||||||||||||| | ||| Sbjct 233 GCCCGCGTGGCCGGTGTGACTTCGTCTAAGGATCTCGGCCCGCGCCAGGTCGGTGCCGTG 292 Query 9889 CTGGTCGAACTCCAGCGCTTGGGCTGGAAACCGAAGAGCAATCGGCAAGGCCGGGCGACG 9948 || ||| || |||||||||| ||||| || ||| |||||||| | | Sbjct 293 CTACGCGAGTTCGAGCGCTTGGGATGGAAGCCAAAG----------CCGGCCGGGCCAAG 342 Query 9949 CCAAAAG-TGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTGGCCAG 10007 || | | || | | | | ||| || | || | |||| ||| |||| |||||| Sbjct 343 CCGCATGCGGCGGTAGATCGGGCGAAGCTTG-TCGGCAAGATCGAGGCGCAACTGGCCGA 401 Query 10008 CGCCCATCGCCCCTGGAGCTACGCCGA-CCACATGGCCCGGCGCATGTTCCAGGTCGAGC 10066 || ||||| ||| ||||||||| ||| ||||| ||| | | ||||||||| Sbjct 402 GGCTGGCCGCCCTTGGGACTACGCCGATGCAC-TGGCCAAGCGACTTTATAAGGTCGAGC 460 Query 10067 GGGTCGAGTGGCTGGACGACAGCCAGCT 10094 | | || ||||| || | || ||||| Sbjct 461 GCCTGGAATGGCTCGATGCCAAACAGCT 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117897293340000