Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_030918.1 Length=36629 Score E Sequences producing significant alignments: (Bits) Value seq74251 156 1e-33 seq83134 104 5e-18 >seq74251 Length=708 Score = 156 bits (172), Expect = 1e-33 Identities = 324/471 (69%), Gaps = 30/471 (6%) Strand=Plus/Minus Query 2761 CATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGTGACTTCACCAAG---CTGCTCCCG 2817 || ||| ||||||| |||| || ||| ||||| || ||||| ||| |||| Sbjct 684 CAGGAACTCAAGGCCCTGCAACCTTTC---CGCCGACGCTCGACCAAAAACCTGTTCCCC 628 Query 2818 ACCGACGTCTATTCCTGCG-ACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCA 2876 ||||||| | | ||| ||||||||| ||||||||||||| || |||| || Sbjct 627 GGGGACGTCT-TCACGGCGGACGGCCACAAGTTCGACGCCGAGATCATCAACCCTCTGAC 569 Query 2877 CGGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTCC 2936 |||| ||| | | | |||||||||||||| | |||||| || ||||| || | Sbjct 568 GGGCCAGCCGTACAGACCGGAAATCACCACGGTTATCGACGTCGCCACCCGGCGCGTAGT 509 Query 2937 GGGATGGTCCACCGGCCTGGCCGAGTCGGCCCTGGTGGTTGTCGATGCCCTGCGCGACGC 2996 ||| || |||| ||||||||||||| | | || | || | |||||| ||||| Sbjct 508 GGGTATTTCGGTCGGCGAGGCCGAGTCGGCCATCGGTGTGCTGGACG-CCTGCGTGACGC 450 Query 2997 CTGCACCAAGGGCG-GCATTCCGGCCATCTTCTACGTGGACAACGGCTCAGGCTACGTAA 3055 | | || || |||| || | |||||||||||||| || || |||| || | Sbjct 449 CATC----CGGTCGTGCATGTTCGCTGTGTTCTACGTGGACAATGGTTCGGGCTTCGCCA 394 Query 3056 ACCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGA-CATGAAA 3114 | ||| ||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 393 ATGACACAGTGCGCGA------GGTCG------TGGACCGCCTGGGCGGCGACCATGACG 346 Query 3115 AACAGCCTGCCCTACAACAGCCAGGCGCG-GGGCGTGATTGAGCGCGTCCACCAGAGCCT 3173 || |||||||||||||||||||| || || | || | ||||| | |||||||| | | Sbjct 345 CACTCGCTGCCCTACAACAGCCAGGCACGCGGTCCTG-TCGAGCGAG-CCACCAGACCAT 288 Query 3174 GTGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGA 3224 ||| | || |||||| | ||| || ||||||||||||| |||||||| Sbjct 287 TTGGGTCAATGCGGCCAAGAAGCTGACCAGCTACATCGGCGCAGACATGGA 237 >seq83134 Length=949 Score = 104 bits (114), Expect = 5e-18 Identities = 226/332 (68%), Gaps = 5/332 (2%) Strand=Plus/Minus Query 256 ATAGGCCGGATTAGCACTGATGATCGCCAGGCCGCCATTGATCTGCCGCTGGACGCGCTT 315 |||||||||||| ||||| | | | | ||||||| |||||| ||||| | ||||| Sbjct 738 ATAGGCCGGATTGGCACTCAACACCTGGATTCCGCCATCGATCTGGCGCTGTAGCCGCTT 679 Query 316 GGCGTACAAGTGGTCATCCAGGCGGATGACGTAGACAGCTTCGTCACGAACCTCATTGCA 375 ||| |||| | ||| |||| ||| ||||||| || ||| | | | | |||| Sbjct 678 GGCATACAGCAAATGATCAAGGC-GATTACGTAGAAGGCCTCGGCCTGCAACGTGTTGCG 620 Query 376 ACTGTGGTCAATCATCACCGTATCGCCATCGCTCAACAGTGGCTCCATTGAGTCACCGCC 435 || |||| |||||||| || |||||||| | || || || ||||||| ||| | Sbjct 619 ACGTAGGTCCATCATCACAGTGTCGCCATCTGAAAGCACCGGTTCATTTGAGTCTCCGTC 560 Query 436 GATGCGGACGGCCGACATATTCGCGA-TCTCCAG-GCCTTGCTTCCGCAAGCTGTAGCGA 493 | || || || | | ||| | | |||||| |||| | | |||| ||| || || Sbjct 559 AACCCGCACCGCTG-CTAATTGGGAAGGCTCCAGCCCCTTACGT-CGCAGGCTATACCGC 502 Query 494 GTGAATGCCAACTGAGCGAGTATCTGCGCCCCCTCTGTCCAGGAGCCGTGACCAGCGCGC 553 || || || | ||| | || | || ||||||| |||||| ||||||||| | Sbjct 501 GTAAAGGCGAGCTGGGTAAGCACCTTGCCCCCCTCATTCCAGGCGCCGTGACCTTGACTG 442 Query 554 ACCCGAGCGTCATACAGAGGGATATAGGCGTA 585 | ||||||||||| || ||||| |||| || Sbjct 441 ATACGAGCGTCATAAAGGGGGATGAAGGCATA 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116910023322600