Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq77006 439 8e-119 seq54636 163 9e-36 seq103062 131 5e-26 seq54635 131 5e-26 seq26185 118 3e-22 seq6483 118 3e-22 seq82834 109 2e-19 seq70509 86.0 2e-12 >seq77006 Length=667 Score = 439 bits (486), Expect = 8e-119 Identities = 494/649 (76%), Gaps = 18/649 (3%) Strand=Plus/Plus Query 7267 CGACGCGGAGTTCTGCGCATTGGTCGAGCATGAGCTCTACCACATCTGCCAAGAGCACAA 7326 |||||| |||| |||||| | | ||||||| ||||||||||||| | ||| |||| | Sbjct 12 CGACGCCGAGT-CTGCGCCTCG-TCGAGCACGAGCTCTACCACA-CGCCCAGGAGCTGGA 68 Query 7327 CCAATATGGCGAGCCCAAGTTCACCGAGGAGGGCTTTCCAAAGCTGAAGCTCCGCGGGCA 7386 | |||| || |||||| ||| ||| | || ||||| ||||| ||||| || Sbjct 69 TGGCTTCGGCGCTCCAGCCTTCACCCGGGACGGCATGCCCAAGCTCAAGCTGCGCGGCCA 128 Query 7387 TGACGTCGAGGAGTTCGTCGGCGTGGTGAGGCGGTACGGCCCAAGCAAGGACGTGCAGTA 7446 |||||||||||||||||||||||||||| | || || ||| | ||| |||||||||| Sbjct 129 TGACGTCGAGGAGTTCGTCGGCGTGGTGCGTCGCTATGGCGCCAGCCCGGACGTGCAGCG 188 Query 7447 TCTCATCGACGCTGCTAGCAGGCCTCCAGAGGTGGCCAAAATTAACATTTCGAGAGCCTG 7506 || | || || || | ||| || || ||||||| ||| | |||||| |||| ||||| Sbjct 189 CCTGGTGGAAGCCGCGAACAG-CCGCCCGAGGTGGAGAAA-TCAACATTGCGAGGGCCTG 246 Query 7507 CGGTACGTGCCTGCTGAAGTCGGCATAGCCAC-GACAGGCCCATGACAGGAAGAAAAACG 7565 ||| || || ||||| |||||||| | || | ||||| ||| |||| ||||| | ||| Sbjct 247 CGGAACCTGTCTGCTCAAGTCGGCTTGACCTCTGACAGACCCTTGAC-GGAAGTAGAACC 305 Query 7566 ATGGCAACCCTGAACAGCGACGTGAAGGCGTTCATCGTTCAGGCGCTGGCCTGTTTCGAT 7625 ||||| ||||||| || ||| ||||| || |||||||||||||| |||||||||||||| Sbjct 306 ATGGCCACCCTGAGCAACGATGTGAAAGCCTTCATCGTTCAGGCCCTGGCCTGTTTCGAC 365 Query 7626 ACGCCATCCCAGGTTGCGGAATCGGTCAAGAAGGAATTCGGCATCGAGGTCAGTCGGCAG 7685 ||||| |||||||| || | | | |||| |||||||||| ||||||||||| || ||| Sbjct 366 ACGCCCTCCCAGGTGGCAGCAGCCGTCAGAGAGGAATTCGGGATCGAGGTCAGCCGCCAG 425 Query 7686 CAGATCGAGTCGCACGACCCGAACAAGGTGTGCAGCAAGGGC----CTTGCCGC-GAAGT 7740 ||| | ||| ||||||| | ||| | || |||| | ||| | ||||| Sbjct 426 CAGTGC-AGTGCTACGACCCCACGAAGT-----ACCAGGGGCGCAACCTGCACCAGAAGT 479 Query 7741 GGCGGATCCTCTTCGAGGACACCCGCAAGCGCTTCCGCGAGGAGATCGCCGACATCCCGA 7800 |||| | | ||||||| ||||||||| |||||| ||||| |||| ||| |||||||||| Sbjct 480 GGCGCACCGTCTTCGACGACACCCGCCGGCGCTTTCGCGAAGAGACCGCGGACATCCCGA 539 Query 7801 TCGCCAACCGCGCCTACCGACTGAGGGCATTGGGTCGGATGGCTGAGCGCGCCGAGGGCA 7860 ||||||||||||| |||| || | | |||| || |||||| || |||||||| | Sbjct 540 TCGCCAACCGCGCGCACCGCCTCCGCACCCTGGGCCGCATGGCTCAGAAGGCCGAGGGGA 599 Query 7861 TGCGAAACATGGCCCTGGCTGCCCAGCTTTACGAGCAGGCCGCCAAGGA 7909 |||| ||| |||| ||| |||||||||| ||||||||||||||||| Sbjct 600 TGCGCAACCTGGCGCTGACTGCCCAGCTGCTGGAGCAGGCCGCCAAGGA 648 >seq54636 Length=518 Score = 163 bits (180), Expect = 9e-36 Identities = 289/415 (70%), Gaps = 30/415 (7%) Strand=Plus/Minus Query 31465 TCGCCCAGGTCGGCCACGAAAGCGGCCAGTTGACCCGCTTGGTGGAGAACCTCAACTACA 31524 |||||||| ||| ||||| |||| || |||||||| ||||||| ||||||||||||| Sbjct 417 TCGCCCAGTGCGGTCACGAGTCCGGCAAGCTGACCCGCCTGGTGGAAAACCTCAACTACA 358 Query 31525 GTGCCCGTGGCCTGGCTGCGACCTGGCCGAGCCGGTACCTCGGCG--CCGACGGCCAG-- 31580 | |||| |||||||| |||||||| ||||| ||| || | ||| ||| | Sbjct 357 GCGCCCAGGGCCTGGCCAAAACCTGGCCCAGCCGCTACGCCGTGGATCCGCGTGCCCGGG 298 Query 31581 --------CCCAACGCCCTGGCGCAGCGCCTGGCGCGCAACCC--CCG--AGCCATCGCC 31628 || |||| |||| |||| ||| ||| || ||| ||| |||||| Sbjct 297 AGCTGAGGCCGAACGAGTTGGC----CGCCAGGCTCGCGCGCCGGCCGGAAGCGATCGCC 242 Query 31629 AACAACGCCTACGCCTCGCGCAACGGCAATGGCGACGAGGCATCGGGCGACGGCTGGCGG 31688 ||||||||||| ||| |||||||| |||||| || | || ||||| |||||| | Sbjct 241 AACAACGCCTATGCCAACCGCAACGGGAATGGCCCGGAATCTTCCGGCGATGGCTGGAAG 182 Query 31689 TACCGCGGGCGCGGGCTGCTGCAGATCACCGGCCGGGCGAACTACCGCGCCGCCGGCGAC 31748 ||||| || | || ||||||||| ||||||||||||| |||||| | ||||||| | Sbjct 181 TACCGGGGCAGGGGACTGCTGCAGGTCACCGGCCGGGCCAACTACGTCAACGCCGGCACC 122 Query 31749 GGGCTGGGCCAGCCGCTGGAGCAGGAACCCGAGCTTCTCGAGCAACC--GGAGTGGGCGG 31806 | |||| | | |||| | | |||||||| || |||| || ||| | | | Sbjct 121 GCCCTGGCGCTGGATCTGGTCCGCCACCCCGAGCTGCTGGAGCTGCCCTGGA-ACGCCTG 63 Query 31807 CGATCTCGGCGGC---CTGGTGGTGGGCCAGTCACGGCTTGAACGACCTGGCCGA 31858 | || || ||||| || |||| ||||| |||| ||||| | |||||||| Sbjct 62 C-ATGTCCGCGGCGCACTTCTGGTCGGCCA---ACGGGCTGAACCAGCTGGCCGA 12 >seq103062 Length=468 Score = 131 bits (144), Expect = 5e-26 Identities = 262/386 (68%), Gaps = 12/386 (3%) Strand=Plus/Minus Query 33775 GATCAGACCGTCCTTCACAGCGGAATCTAGGATCGTCGACAGCTTGAACATCGCGTTTCG 33834 |||||| || || | || || | | |||||||| ||||| | ||| ||||| || Sbjct 377 GATCAGTCCATCATGGACCGCAGCCTTCAGGATCGTGGACAGGCGCACCATGGCGTTGCG 318 Query 33835 CTTCACGCCTGGCGACGTCCACTCGATGCTGCTGATGATTCGGCGCAAGAGGGTAGGGGT 33894 ||| ||||||||||| | ||||||| | | ||| ||| || || | | || | ||| Sbjct 317 CTTGACGCCTGGCGAGGCCCACTCGGTCTCGGTGAGGATCCGCCGGATCATCGTGGTGGT 258 Query 33895 GATCTGATCAAGCCGGGCTACTGCTAGATGTGGCATCCAGTATTGGTTGAGGATGCTCTT 33954 |||| | || | ||||| | || || ||||||||||| |||| || || ||| Sbjct 257 GATCAGGTCCACCCGGGTCAGCGCCAGCCTCGGCATCCAGTAGAGGTTCAGCGCGCCCTT 198 Query 33955 GTAGTTCTTGCGTGTCCCAAGCACGATCTCTCGGCTGTCTAGCCAGAGTTGAGCATGCTC 34014 |||||| || || || ||| ||| || ||||| || ||||| || || |||| | Sbjct 197 GTAGTTGTTCCGCGTTCCAGCGGTGATGTCCCGGCTATCCAGCCATAGCTGGGCATATTG 138 Query 34015 ACCGAACAGGGGGATTTGGCTGCTGACCGATTCCGCAATCG-CAGACCCGGGGAAGAACT 34073 ||||| | |||| | | ||| || | | | || || ||||| | || Sbjct 137 CCCGAA------GGTTTGCCCACCCCCCG----CGATGTTGACCGAGCCCGGGAACAGCT 88 Query 34074 CTGCATACCGGGCTTCATCCATGATGCCCAGCTTGATTGCCTGGACTACCTGATCTCTAA 34133 | |||||| || ||||||| | |||||||||||| |||||||||||||||||||| Sbjct 87 CGGCATACTTCGC-GCATCCATCAGGCCCAGCTTGATCAGCTGGACTACCTGATCTCTAA 29 Query 34134 GACCGGATGCAGTCTTAATCCCTTTT 34159 | || |||| | ||||||||| Sbjct 28 GCTTGGCGGCAGCCGAGATCCCTTTT 3 >seq54635 Length=814 Score = 131 bits (144), Expect = 5e-26 Identities = 175/238 (74%), Gaps = 14/238 (6%) Strand=Plus/Minus Query 31461 TTCCTCGCCCAGGTCGGCCACGAAAGCGGCCAGTTGACCCGCTTGGTGGAGAACCTCAAC 31520 ||||||| |||| ||||||||| |||| | |||||||| |||| |||||||| ||| Sbjct 243 TTCCTCGGCCAGTGCGGCCACGAGTCCGGCGAACTGACCCGCCTGGTCGAGAACCTGAAC 184 Query 31521 TACAGTGCCCGTGGCCTGGCTGCGACCTGGCCGAGCCGGTA---CCTCG------GCGCC 31571 ||||| |||| |||||||| | ||||||||||||||| | ||| ||||| Sbjct 183 TACAGCGCCCAGGGCCTGGCCAACAACTGGCCGAGCCGGTACGCCATCGACCCGCGCGCC 124 Query 31572 GACG-GCC--AGCCCAACGCCCTGG-CGCAGCGCCTGGCGCGCAACCCCCGAGCCATCGC 31627 | | ||| ||||||||| |||| ||| | ||||| || |||| || ||||| Sbjct 123 AAGGAGCCGAAGCCCAACGAGCTGGCCGCCAAG-CTGGCCCGGCGCCCCGAGGCGATCGC 65 Query 31628 CAACAACGCCTACGCCTCGCGCAACGGCAATGGCGACGAGGCATCGGGCGACGGCTGG 31685 ||||||||||| ||| ||||||||||| ||| ||| | || || ||||||||| Sbjct 64 GAACAACGCCTATGCCAACCGCAACGGCAACGGCCCGGAGTCCTCCGGTGACGGCTGG 7 >seq26185 Length=1059 Score = 118 bits (130), Expect = 3e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 47801 CATTTTGGGACTCAAGACGAGACCGCCGCGAAGCTCGGCGTTGACCAAAGCACTGTGTCT 47860 ||||| || || || || |||||||| | ||||| || |||||||||||||||||| Sbjct 1028 CATTTCGGCACCCAGGAGCTGACCGCCGAGGCCCTCGGAGTCGACCAAAGCACTGTGTCT 969 Query 47861 GGATGGGTCCGGGGAAAGCACGGGATGTCTCCTGTTGTTGCGAAGCGGGCTCAGGTTCTG 47920 |||||||| || || |||||||| |||||||| || || || ||||| ||| || || Sbjct 968 GGATGGGTTCGCGGCAAGCACGGCATGTCTCCGGTGGTGGCCAAGCGCGCTGAGAAGCTC 909 Query 47921 ACCGACGGGAAATTCAAGAAAGAGGACCTGTGTCCGGCTTTCCCGTGG 47968 |||| ||| |||| || ||| ||||||| || | ||||| ||| Sbjct 908 ACCGGCGGTTCCTTCAGCAAGGAGCACCTGTGCCCCTCATTCCCCTGG 861 >seq6483 Length=2269 Score = 118 bits (130), Expect = 3e-22 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 33114 TCTGTAGCTTCTCCAACTCGCTCCAATCCGAGGCGGAGTTCAGCCACTTGGCATAGGTCG 33173 |||| ||||| | | ||| |||| ||||| |||| | ||| ||||||||| | Sbjct 1731 TCTGCAGCTTTGCGATTTCGTTCCAGTCCGATTGGGAGGAGATCCAGCGGGCATAGGTTG 1790 Query 33174 ATAGCAGCATCTGCACGCTGTGGCCTAGCTGTCCAGCGATAAACGCAGGGTTCATGCCAG 33233 ||||||||||||||||||||||||||||||| || || || || || ||||||||||| | Sbjct 1791 ATAGCAGCATCTGCACGCTGTGGCCTAGCTGGCCTGCAATGAAGGCGGGGTTCATGCCCG 1850 Query 33234 CCATCAGGCACATGGTCGCGTATGTGTG 33261 ||| ||||| || || || || ||||| Sbjct 1851 ACATGAGGCATATTGTGGCATAGGTGTG 1878 >seq82834 Length=403 Score = 109 bits (120), Expect = 2e-19 Identities = 257/384 (67%), Gaps = 3/384 (1%) Strand=Plus/Minus Query 7473 CAGAGGTGGCCAAAATTAACATTTCGAGAGCCTGCGGTACGTGCCTGCTGAAGTCGGCAT 7532 |||||||||| || || |||| | ||||| ||||| |||||| |||||| | |||| Sbjct 390 CAGAGGTGGCAAACATAGACATAGCCAGAGCATGCGGCACGTGCATGCTGAGGCTCGCAT 331 Query 7533 AG-CCACGACAGGCCCATGACAGGAAGAAAAACGATGGCAACCCTGAACAGCGACGTGAA 7591 | ||| ||||| | | ||| ||| | |||| ||||| | || || || | || Sbjct 330 AAACCAGGACAGAGC-AGGAC-GGATGGTAAACTATGGCGGCGCTTAAACCGGAAATTAA 273 Query 7592 GGCGTTCATCGTTCAGGCGCTGGCCTGTTTCGATACGCCATCCCAGGTTGCGGAATCGGT 7651 || || || ||||| | | || || || ||||||||||| |||||||| || || || Sbjct 272 AGCCTTTATAGTTCAATCCGTTGCTTGCTTTGATACGCCATCGCAGGTTGCCGAGTCCGT 213 Query 7652 CAAGAAGGAATTCGGCATCGAGGTCAGTCGGCAGCAGATCGAGTCGCACGACCCGAACAA 7711 | ||| ||||| ||| | || | | || |||||| | ||| |||||||| | || Sbjct 212 CCTGAAAGAATTTGGCGTGAAGATAAACCGCCAGCAGGTTGAGCAACACGACCCAACGAA 153 Query 7712 GGTGTGCAGCAAGGGCCTTGCCGCGAAGTGGCGGATCCTCTTCGAGGACACCCGCAAGCG 7771 || || | ||| || || ||| ||| | | | ||| | ||||| |||| | Sbjct 152 GGCCAGCGGTAAGAAGCTGGCAAAGAAATGGGTGGACATGTTCAACGACACGCGCAGCAG 93 Query 7772 CTTCCGCGAGGAGATCGCCGACATCCCGATCGCCAACCGCGCCTACCGACTGAGGGCATT 7831 || | | | || || ||||||||||||||||| || ||||| || || | | Sbjct 92 GTTTCAGACGCAAATAGCTGACATCCCGATCGCCAATAAGGCATACCGCCTTCGGACGCT 33 Query 7832 GGGTCGGATGGCTGAGCGCGCCGA 7855 | || ||||| |||| |||| Sbjct 32 TGACCGCATGGCGACGCGCACCGA 9 >seq70509 Length=725 Score = 86.0 bits (94), Expect = 2e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 6173 AAGTACGCCGGTATGGCGCAACAGGGAGCGCTGCTGATTTGTAATCAGAGGGTTGCGGGT 6232 || ||||||||||| || || ||| || ||| ||| ||||||||||| |||| | |||| Sbjct 52 AATTACGCCGGTATAGCTCAGAAGGTAGAGCTACTGTTTTGTAATCAGTGGGTCGTGGGT 111 Query 6233 TCGACTCCTGCTGCCGGCACCA 6254 |||| |||| |||||||||||| Sbjct 112 TCGATTCCTACTGCCGGCACCA 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156541406157000