Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_030934.1 Length=90552 Score E Sequences producing significant alignments: (Bits) Value seq44175 206 2e-48 seq27013 192 3e-44 seq44219 152 3e-32 seq56781 98.7 6e-16 seq57034 93.3 2e-14 >seq44175 Length=2096 Score = 206 bits (228), Expect = 2e-48 Identities = 291/404 (72%), Gaps = 10/404 (2%) Strand=Plus/Minus Query 67654 GAAGCTGATTTTGTGGTTGGTCAAAAC-TCC--AAGCGCTTTGATGTTAAGAAGATCAAC 67710 ||||||||||||||||||||||||||| ||| ||| |||||| | ||||| ||||| Sbjct 1438 GAAGCTGATTTTGTGGTTGGTCAAAACATCCGTAAG---TTTGATATGAAGAAAATCAAT 1382 Query 67711 GCTCGGTTTATTTTAAATGGTATGCCGAAGCCATCCACATTCCGACAGATTGACACCATG 67770 || || ||||| | |||||| | | || || ||||||| || ||||| ||||| || Sbjct 1381 GCACGATTTATCATTAATGGTTTCACTAAACCCTCCACATATCGCCAGATCGACACGTTG 1322 Query 67771 GAGATTGCTAAGCGTCAGTTTGGCTTCACCAGTAATAAACTGGCGTATATGACGGACAAA 67830 |||||||| || |||||| || || |||||||| | ||| ||||| || ||| Sbjct 1321 CTTATTGCTAAATCTCTGTTTGGATTTACATCAAATAAACTTGAGTACATGACAGATAAA 1262 Query 67831 CTATGCACCGTGTATAAGAAGCTTGACCATCAGAAATTTTCAGGCCACAGCTTGTGGGCA 67890 || || | || |||||| | || | |||||| | || || | |||||| || Sbjct 1261 CTTTGTAAGAAATACAAGAAGAAAAAGCACCTTAAATTTCCTGGTCATACTTTGTGGTCA 1202 Query 67891 GAGTGTCTAAAAGGCAATCCCGAGGCGTGGGCAGAGATGAAGGAGTACAATATTTATGAC 67950 |||||| | ||||| |||| || || |||| || ||||| ||||| || || | ||| Sbjct 1201 GAGTGTATGAAAGGTAATCTTGAAGCTTGGGATGAAATGAAAGAGTATAACATCTTTGAT 1142 Query 67951 GTGCTCTCTCTGGAAGAGTTGTATGA--TATTCTTTCAAGTTGGGATGATAAACTCCCTA 68008 ||||||||| ||||||||||||| |||| | | |||||||| |||||| || | Sbjct 1141 GTGCTCTCTAACCAAGAGTTGTATGAGGTATTTATGC--CTTGGGATGCTAAACTTCCAA 1084 Query 68009 ATTTTGATGTTTACGTTGATGGAGTCTTGGATATGTCTGAATGG 68052 | || || | || || |||| | |||||||| ||||||| Sbjct 1083 ACTTCGACTTGTATGTGGATGAACCTCTGGATATGAGTGAATGG 1040 >seq27013 Length=32742 Score = 192 bits (212), Expect = 3e-44 Identities = 328/474 (69%), Gaps = 4/474 (1%) Strand=Plus/Plus Query 67646 TACTCAACGAAGCTGATTTTGTGGTTGGTCAAAACTCCAAGCGCTTTGATGTTAAGAAGA 67705 |||| ||||||| |||||||| || ||||| || | ||| ||||||||||| |||| Sbjct 5299 TACTTGACGAAGCAGATTTTGTTGTGGGTCATAATACTAAGAAGTTTGATGTTAAAAAGA 5358 Query 67706 TCAACGCTCGGTTTATTTTAAATGGTATGCCGAAGCCATCCACATTCCGACAGATTGACA 67765 | | |||| || | | || || ||| | || ||||| || ||||| || ||||||| Sbjct 5359 TTTTCTCTCGATTCTTAATTAACGGCATGACCAAACCATCTACCTTCCGTCACATTGACA 5418 Query 67766 CCATGGAGATTGCTAAGCGTCAGTTTGGCTTCACCAGTAATAAACTGGCGTATATGACGG 67825 | || ||||| ||| ||| ||| || || || ||| ||||| | |||| | || | Sbjct 5419 CGCTGTTAATTGCAAAGAGTCTGTTCGGTTTTACTTCTAACAAACTTGAGTATCTTACTG 5478 Query 67826 ACAAACTATGCACCGTGTATAAGAAGCTTGACCATCAGAAATTTTCAGGCCACAGCTTGT 67885 | || || |||| ||| ||||| | ||| | || || || ||||| Sbjct 5479 ATAAGCTTTGCAAAAAGTACAAGAAATCCAAACATAATAAGTTCAGCGGTTTTGCCTTGT 5538 Query 67886 GGGCAGAGTGTCTAAAAGGCAATCCCGAGGCGTGGGCAGAGATGAAGGAGTACAATATTT 67945 || | |||||||| ||||| ||| || || |||| ||| ||| | || ||||| | | Sbjct 5539 GGTCTGAGTGTCTTAAAGGTAATATGGAAGCTTGGGAAGAAATGGAAGATTACAACAAGT 5598 Query 67946 ATGACGTGCTCTCTCTGGAAGAGTTGTATGATATTCTTTCAAG--TTGGGATGATAAACT 68003 ||| || | || |||| ||||||| || ||||| | |||||||| |||||| Sbjct 5599 TTGATGTATTGTCAAACCAAGAACTGTATGAAAT--TTTCATGCCTTGGGATGCTAAACT 5656 Query 68004 CCCTAATTTTGATGTTTACGTTGATGGAGTCTTGGATATGTCTGAATGGCAAGTGGACGG 68063 ||||| || ||| | || ||||||| || | | |||||||| |||||| | || || Sbjct 5657 GCCTAACTTCGATTTGTATGTTGATGAAGCCCTAGATATGTCAGAATGGGTTGAAGATGG 5716 Query 68064 ATTTCACTACTCAAACCTTGGAAAGTATAAGAGGTATCGTAATACGCGCACAGG 68117 | ||||| | | |||||||| |||||| || | ||||| || | ||||| || Sbjct 5717 TTATCACTTCACCAACCTTGGCAAGTATCAGCGTTATCGCAACAAACGCACTGG 5770 >seq44219 Length=359 Score = 152 bits (168), Expect = 3e-32 Identities = 248/352 (70%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 67447 GATATTGAAACCAAACCCATTCTTGCACAAGTGTGGCGACTATGGGACCAGAACGTAGGT 67506 |||||||| || || ||||| || ||||| ||| | | ||||| ||||||||||| Sbjct 350 GATATTGAGCTTAAGCCAATTCTCGCCCAAGTTTGGGCATTGTGGGATCAGAACGTAGGA 291 Query 67507 CTCAATCAGATTGAGCAGGACTGGAGTATCCTTTCATTCTGTGCTAAGTGGAAAGGTTGT 67566 ||||||||||| | | || |||||||||||||| ||||||||||| ||||| || Sbjct 290 CTCAATCAGATCCAAGAAGATTGGAGTATCCTTTCCTTCTGTGCTAAATGGAAGCATTCA 231 Query 67567 GAGGACGTTGTTTA-CATGGACCTAAAAGATCAGGATGACTTTGAGGATGATAGTACCCT 67625 || || || | || ||| || ||| || || | ||| ||||| |||||| | || Sbjct 230 GATGAAGTGATATATCAT-GATCTATCAGGGCAAGCTGATTTTGAAGATGATTACAAGCT 172 Query 67626 ACTTGACAGCCTGTGGCGTCTACTCAACGAAGCTGATTTTGTGGTTGGTCA-AAACTCCA 67684 || || | || ||| | |||| || || ||| | |||| || ||||| || | Sbjct 171 TCTAGAGAAGCTTTGGGATTTACTTAATGAGGCTCACGTTGTCGTAGGTCAGAATAGTAA 112 Query 67685 AGCGCTTTGATGTTAAGAAGATCAACGCTCGGTTTATTTTAAATGGTATGCCGAAGCCAT 67744 | ||||| ||||| || |||||| |||| || || | | ||||| | || ||||| | Sbjct 111 AACGCTTCGATGTGAAAAAGATC-ACGCCCGCTTGGTACTGAATGGCTTTCCTAAGCCTT 53 Query 67745 CCACATTCCGACAGATTGACACCATGGAGATTGCTAAGCGTCAGTTTGGCTT 67796 | || ||||| || |||||||| ||| || || || | ||||| || || Sbjct 52 CTACCTTCCGCCAAATTGACACTATGATCATCGCCAAACAGCAGTTCGGATT 1 >seq56781 Length=1399 Score = 98.7 bits (108), Expect = 6e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 70285 CACAAACAAGTTGCAAACCGTATCCTTGAACCATTCCAGACTATGAAGACTGTCATGACA 70344 || ||||| ||| |||||| | | ||||| ||||||| |||||||||||||||||| Sbjct 65 CATAAACAGATTGTGAACCGTTTGGTCGAACCGTTCCAGATGATGAAGACTGTCATGACA 124 Query 70345 GCTACTTGCATGGACAACTTCTTCTGGCTTCGTAACCATGAAGATGCACAACCAGAAAT 70403 || || |||| |||||||||||| | ||| |||||||||||||||| ||||| Sbjct 125 GCAACAGAACTGGATAACTTCTTCTGGTTACGTTTAGATGAAGATGCACAACCTGAAAT 183 >seq57034 Length=296 Score = 93.3 bits (102), Expect = 2e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 70285 CACAAACAAGTTGCAAACCGTATCCTTGAACCATTCCAGACTATGAAGACTGTCATGACA 70344 ||||| || ||| || ||| | ||||||||||||||| |||||||| |||||||| Sbjct 264 CACAAGCAGATTGTGAATCGTCTTGTTGAACCATTCCAGATGATGAAGACCGTCATGACT 205 Query 70345 GCTACTTGCATGGACAACTTCTTCTGGCTTCGTAACCATGAAGATGCACAACCAGAAATC 70404 || || | || || ||||||||||| || || |||||||||||| || ||| Sbjct 204 GCAACCGAGCTTGATAATTTCTTCTGGCTACGCTTGGATACAGATGCACAACCTGAGATC 145 Query 70405 AAAGAGCTTGCTCGTTTGATGTGGGGAGCTTTGCAGGCAAGTACACCTAATGAGTTGAAG 70464 | || |||||||||| ||| ||| ||| || | | |||| | ||| || Sbjct 144 TACGAACTTGCTCGTTGTATGCGGGAGTGTTTAGAGAAATCTGAACCTGAACTGTTACAG 85 Query 70465 CCGGGCGAGTGGCATACCCCATAT 70488 || || |||||||| || || ||| Sbjct 84 CCTGGGGAGTGGCACACACCTTAT 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 289181640087900