Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq20954 212 1e-50 seq46092 179 8e-41 seq59449 158 3e-34 seq2157 154 3e-33 seq84503 95.1 3e-15 seq41145 93.3 9e-15 seq46093 91.5 3e-14 seq9465 84.2 5e-12 >seq20954 Length=3811 Score = 212 bits (234), Expect = 1e-50 Identities = 791/1209 (65%), Gaps = 72/1209 (6%) Strand=Plus/Minus Query 12004 GCGCTGTAGGT-AAT--CAGGCCGCTGGCCGTGGTGCCGCGCTTG---ATCGACAGGAAC 12057 ||| ||||||| ||| | ||||||||| |||||| |||| || | || | | Sbjct 3212 GCGGTGTAGGTGAATTGCCTGCCGCTGGCGGTGGTGGT---CTTGCGAATGGCCATCAGC 3156 Query 12058 GCCGCCGCGACCTCGGTCCAACCGGCATCCCATTCGATGCGCTTGCCCTGGATCACGTCC 12117 | | ||||| |||||||| ||||| || |||||| || | || ||||||||| Sbjct 3155 GTCTGGGCGACATCGGTCCAGCCGGCGTCGAATTCGAGCCGGCCGTTCTTGATCACGTCG 3096 Query 12118 TGGGCCTTGAGCACCAGGGCGTTCTTCGCCTCCAGGCTGTAG-TGAATCGGAGTAGCCCG 12176 | |||||||||||||||| | |||| |||| | |||| |||| | || || Sbjct 3095 TAGGCCTTGAGCACCAGGCGGGTCTTGACCTCGGGCGAGTAGCTGAAGGTGGTCAGACCC 3036 Query 12177 GGGGAAGAAGTCTTTCACCAGGTCGAACACCCCGTAACCGACGCCGGTAATGTCGATGCC 12236 ||| ||||| | |||||| | | ||| ||| || | |||||| | |||||||| Sbjct 3035 GGG-AAGAACTGGCGCACCAGCTGGGCCACGCCGCTGCCCATGCCGGTGACATCGATGCC 2977 Query 12237 GATGT-GCTGGACGTTGAAGCGCTCGCACAGCTTCTCGATCTGCTTTGCCTGATGCGTGA 12295 ||||| ||| || | |||||| ||| | || |||| || ||||| ||| Sbjct 2976 GATGTAGCTC-ACCCAGTAGCGCTGGCAGACCTGGCGGATCGCCTCGGCCTGG-GCGG-- 2921 Query 12296 ACGACGTCCCCCGCCAG----CTG-TGCTTCTCCAGGATTCGGAACTTGCCGCCCGGCTC 12350 ||| |||| |||| ||| || ||| || | ||||||||||||||||| | Sbjct 2920 -CGAAGTCCAGTGCCACGGAACTGGTGGCGCTCGAGCACGCGGAACTTGCCGCCCGGTAC 2862 Query 12351 CAGGGGCGGGGCAACGACAACGCACGTCG-CGTCGTCGCGGGT-TCGACTGGGGTCATAC 12408 | ||||| || || || || || | || || ||||| ||| ||| | ||||||||| Sbjct 2861 CGCCGGCGGCGCGACCACCAC-CAGGCCGGCGGTGTCGCCGGTCTCGGC-GGGGTCATAG 2804 Query 12409 CCGAGCCAGACCGGGCGGTTGTCGAACGGCCGCGGGCTGTC--CGGGTCGTAGTC---GG 12463 |||| ||| |||| ||| | | | | || || | ||| ||| | |||||| || Sbjct 2803 CCGACCCAAACCGAGCGATCGCCCAGAGGTCGAG--CTGCAAACGGTTTGTAGTCCTCGG 2746 Query 12464 TCCA-TAGGCCCAA--GTCGGAATAGCAGCGCTCCAGGTCGGCCAAGGCGAATGCAGCCT 12520 ||| | | |||| ||| |||| ||| ||| ||||| || ||| | || Sbjct 2745 CCCACTCGACCCAGCTGTCCACCATGCAGGGCTGCAGCATGGCCAGGGGGAA-GATGCTC 2687 Query 12521 GGGTGCT-GTCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTCTTCGTCGTACTCC 12579 | | | ||||| ||||| |||||| | ||| | | |||| ||| | ||| || Sbjct 2686 GCGCCGTCGTCGACGAACTGGCACATCAGCAGGTTCTGGAAGGCCTCGGCCGAGTATTCG 2627 Query 12580 AGCTGCAGGCGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTG 12639 |||| || ||| |||||||| |||| |||||||| || |||||| | || ||| Sbjct 2626 AGCTTGAGCTCCTCGAGGTCGAAGAGGTCGCAGCCGCGGGACTCGGCGTCCAGGATGGTG 2567 Query 12640 ATGACCTTGCGCCACTGCCCGTCCGGGCACAACGCGCCGGCGTGGATCTGC---GCTTCG 12696 | || || ||||| || |||| ||| | |||||| | |||| || ||| Sbjct 2566 ACGATCTGCCGCCAGATCCGGTCCTCGCAGA----GCCGGCCCTG--CTGCAAGGCGTCG 2513 Query 12697 CTGGGCCACGGCCCGGCCTT------CTTTCCGC---GCTTGCTGTTGCGGAACTCCTCG 12747 |||| || || | ||| || || |||||| ||| ||| |||| Sbjct 2512 -TGGGAGACATCCAG--CTTGAGGTGCTGGGCGACCGGCTTGCCCTTGTTGAAGCGCTCG 2456 Query 12748 CCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTGGGCGTGGAGAAGTAGGTCAGG 12807 ||||||||| | | || |||| ||| | | | ||| ||||| ||||||||||| || Sbjct 2455 CCGGTCCAGAAGGTGTAGGCCTCGTGGGCCATGGAGCTCGGCGTCGAGAAGTAGGTGCGG 2396 Query 12808 CGCCACTTTGCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGG 12867 || ||| ||| |||||| ||||||||||| | | ||||| || ||| | | Sbjct 2395 CGGTACTGCTTCTGCATGGCCATGCCGCTGGCCACCTTGTTCAGCTCCTCGAAGCGGAAG 2336 Query 12868 ATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTGTTC 12927 ||||||| | |||||||| ||||| || ||||||||||| ||| || ||| | || Sbjct 2335 GTCCAGAAGAATTCGTCGAAGTAGAAGTTGCCGTGGTAGCCCTGGGCGGTGCGGGCATTG 2276 Query 12928 GTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTCTTTGCTCAAGATGATGGGATTG 12987 || || || |||| || || |||| ||| || |||||| |||| Sbjct 2275 GTACCTAGGAAGTGCAGCTCGGC---------GCCG---TTGGCCAGGATGATCGGATCC 2228 Query 12988 CCGGACAGCTCGATATCGAACCATTGCGCGGCGAAGGCGACGATGTAGCTGCGGAACACT 13047 |||| || ||||| || | || | ||||||||| |||||| ||| | Sbjct 2227 CCGGTCACCTCGACGCCGCAGACTTCCCGGGCGAAGGC-TGGATGTACGCCTTGAAGATA 2169 Query 13048 TCGGACTGGGCGCGGCTCGCGGACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCGTCC 13107 | | ||| ||| || || ||||| ||||||||| |||||| || |||||| Sbjct 2168 TGCGCCTGATTCTTGCTGGCCGAGAGGAAGATCTGGTTGCGCCCGGTGGTCAGGGCGTCC 2109 Query 13108 ATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATATGG 13167 | ||| || ||| |||||||||| |||| |||||||| || ||| ||||| | Sbjct 2108 AGGAATGCCTCGCGGGCGAAGTAGAAGGTGGCGCCGATCTGCCGGCTCTTGAGGATGGCG 2049 Query 13168 CGGATCCGC 13176 ||| ||||| Sbjct 2048 CGGGTCCGC 2040 >seq46092 Length=2085 Score = 179 bits (198), Expect = 8e-41 Identities = 442/658 (67%), Gaps = 33/658 (5%) Strand=Plus/Minus Query 1428 GGAAAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCAGGCACTCTAC 1487 ||||| ||||||| || || || ||||| ||| ||| |||| ||||| || |||||| Sbjct 1457 GGAAA--AGCGCCCGCTAGGCATACCGACGATGTTTGATCGGGCCATGCAAGCGCTCTAC 1400 Query 1488 CTGCTCGCTCTGTCGCCCATTGCAGAAACCACCGGCGATCCGAACAGCTATGGCTTCAGG 1547 ||| || ||| ||| | |||| |||| |||| ||||| || | |||||| || Sbjct 1399 CTGTCAGCCCTGGAACCCGTCATCGAAAGCACCAGCGACCCGAAAAGTTTCGGCTTCCGG 1340 Query 1548 ATCGAGCGATCCACGGCGGATGCAATG-TCCCAGTTGTTCGTTTGCCTATCCGGAAAGGC 1606 || || || || || ||||| ||| | | | ||| || | || || | | Sbjct 1339 CCGGATCGCTCGACCGCTGATGCGATGGTTGAAATCTTTCAGTTAA-TGTCGAGAGACGA 1281 Query 1607 TTCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGTTTTGACCACATCAATCATGA 1666 || | ||| | ||||| | ||||| | |||| || ||| |||||||||| || Sbjct 1280 CTCACCTATGTGGGTTCTGGAAGGTGACATCAAGGGGTTCTTCGACAACATCAATCACGA 1221 Query 1667 CTGGCTA---CTGAACCATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTGAAGGC 1723 ||||| | |||| ||||| | ||||||| | | || ||| ||||||||||| Sbjct 1220 GTGGCTGTGCCAGAAC---GTCCCTATGGACAAGAAGGTACTGCGGCTGTGGTTGAAGGC 1164 Query 1724 CGGCGTGATCCACAAAGGCCAGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCGGAAT 1783 ||| || || || | || || ||| ||||| || || || || |||||||| || Sbjct 1163 CGGGGTAATTGACCGGCGACACTTCATGGCTACGGAGGCCGGGACGCCACAAGGCGGGAT 1104 Query 1784 CATCTCGCCTACTTTGGCAAACATGGTGCTCGATGGCCTGGAATCACAGCTCAAGCGACA 1843 || ||||| |||||| ||| || | ||| |||| |||||||| | || Sbjct 1103 TATTTCGCCCTGTTTGGCTAACGCCACCCTTAACGGCTTGGAGATGCAGCTCAAAGGCCA 1044 Query 1844 CCTGGGCGTGA--CAAGGGCGAA--GAAGCTGAAACTCA--------ATGTGGTGCGCTA 1891 |||| | | | || | | | || || || || | |||||||||| || Sbjct 1043 TCTGGCCAGAAAGCTAGCGGGTACCGACGCCGATACGCCCAGAGTGCATGTGGTGCGATA 984 Query 1892 TGCGGACGACTTCGTCATCACCGGTGTCTCTCCCGAGGTACTGGAGA---AAGAAGTCAA 1948 |||||||||||| ||||||| | | || || | | ||| || | || |||| Sbjct 983 CGCGGACGACTTCATCATCACAGCGG---CTACCAAAGAGCTGTTGACTGACGAGGTCAT 927 Query 1949 ACCCTGGGTAGAGCAGTTCCTGGCGGTACGCGGGCTGCAGCTCTCTCTG--GAGAAAACG 2006 ||| ||||| ||||| |||||| | ||||| ||| || |||| | || | ||||||||| Sbjct 926 ACCTTGGGTCGAGCAATTCCTGTCAGTACGAGGGGTG-AGCT-TGTCCGAAGAGAAAACG 869 Query 2007 CGGATCGCCCACATAGATCAGGGCTTCGACTTCCTCGGTTGGAACTTCC-GCAAGTAC 2063 | ||| ||||||| |||||||||||| ||||| || ||||| |||| | |||||| Sbjct 868 CAGATAACCCACATCCTTCAGGGCTTCGATTTCCTAGGGTGGAATTTCCAGGAAGTAC 811 >seq59449 Length=627 Score = 158 bits (174), Expect = 3e-34 Identities = 101/108 (94%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 2854 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 2913 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 72 Query 2914 TCCGTGTGGGCCCACCACCTTCAA--AGCCGCGC-ACTGCGCGGCTTT 2958 ||||||||||||||||| |||| | |||||||| ||||||||||| Sbjct 73 TCCGTGTGGGCCCACCAGCTTCCAGGAGCCGCGCTGTTGCGCGGCTTT 120 >seq2157 Length=10186 Score = 154 bits (170), Expect = 3e-33 Identities = 100/107 (93%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 2854 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 2913 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 9598 GGGCCTATAGCTCAGTTGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 9539 Query 2914 TCCGTGTGGGCCCACCA-CCTTCA-AAGCCGCGCACTGCGCGGCTTT 2958 ||||||||||||||||| | |||| |||||||| ||||||||||| Sbjct 9538 TCCGTGTGGGCCCACCAGCTTTCAGGAGCCGCGCGTTGCGCGGCTTT 9492 >seq84503 Length=716 Score = 95.1 bits (104), Expect = 3e-15 Identities = 67/74 (91%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 2887 TCATAATCCTTTGGTCCACGGTTCGAGTCCGTGTGGGCCCACCA-CCTTCA-AAGCCGCG 2944 || ||||||||||||||||||||||||||||||||||||||||| | |||| ||||||| Sbjct 337 TCTTAATCCTTTGGTCCACGGTTCGAGTCCGTGTGGGCCCACCAGCTTTCAGGAGCCGCG 278 Query 2945 CACTGCGCGGCTTT 2958 | ||||||||||| Sbjct 277 CGTTGCGCGGCTTT 264 >seq41145 Length=866 Score = 93.3 bits (102), Expect = 9e-15 Identities = 95/123 (77%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 27250 TACGCCGCTCTGTTCGCCACTATCGGAACCTACTACGGCGCGGGAGATGGATCGACGACG 27309 |||||||| ||||||||| ||||| ||| ||| |||||| || ||||| || || ||| Sbjct 857 TACGCCGCGCTGTTCGCCGTGATCGGTACCAACTTCGGCGCAGGGGATGGCTCCACCACG 798 Query 27310 TTCAA-CCTGCCGGATTATCGCGGCGAATTTTTGCGCGCACTGGACGACGGTCGGGGACT 27368 ||||| ||||||||| |||||||| || ||||||| |||||| || || || | Sbjct 797 TTCAAACCTGCCGGACCTGCGCGGCGAGTTCCTGCGCGCCTGGGACGATGGCCGCGGCGT 738 Query 27369 CGA 27371 ||| Sbjct 737 CGA 735 >seq46093 Length=666 Score = 91.5 bits (100), Expect = 3e-14 Identities = 68/77 (88%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 2854 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 2913 |||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| Sbjct 648 GGGCCTATAGCTCAA-CGGTTAGAGCAGAGGACTCATAATCCTTTGGTTCCAGGTTCGAA 590 Query 2914 TCCGTGTGGGCCCACCA 2930 ||| ||||| |||||| Sbjct 589 TCCTGGTGGG-CCACCA 574 >seq9465 Length=5460 Score = 84.2 bits (92), Expect = 5e-12 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9264 CCGTACCGCCGAAAAGTTCGTAGTGCGCCTACCTGACGGCATGCGCGATCGGGTCGCGGA 9323 ||||||||| || || ||||| ||||| || || || |||||||| || || ||||||| Sbjct 3834 CCGTACCGCTGACAAATTCGTCGTGCGTCTGCCCGAGGGCATGCGAGAGCGCATCGCGGA 3893 Query 9324 GACTGCGCGGGACAACCATCGCAGCATGAATTCGGAGATCATCGCCCGCTTGGAACAGA 9382 || || || | |||||||||||||| || || |||||||| || | || |||| Sbjct 3894 TGTGGCCCGCAACCATCATCGCAGCATGAACTCCGAAATCATCGCGCGTCTCGAGCAGA 3952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104155389311400