Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq33108 187 3e-42 seq31280 114 1e-20 seq49234 105 7e-18 seq34305 100 3e-16 >seq33108 Length=3479 Score = 187 bits (206), Expect = 3e-42 Identities = 151/183 (83%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 9561 TTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 9620 ||| ||||| || ||||||||||| || || ||||| ||||| ||||| || ||||| || Sbjct 2968 TTATAAACTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGA 2909 Query 9621 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 9680 |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 2908 ATTAAAGCGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATG 2849 Query 9681 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 9740 || || || |||||||| |||||||| ||||| ||||||||||| | ||| || || || Sbjct 2848 TTTCACGGCGTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCC 2789 Query 9741 TTC 9743 ||| Sbjct 2788 TTC 2786 >seq31280 Length=10079 Score = 114 bits (126), Expect = 1e-20 Identities = 190/272 (70%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 88502 TTCAGTTGAACGCCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 88561 || || || || || || ||||| ||||| | |||||| |||| || || ||| ||| Sbjct 1342 TTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTT 1401 Query 88562 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 88620 |||| || | || |||| ||||||| |||||| || ||||| | ||| || || || Sbjct 1402 TTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGC 1460 Query 88621 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAA 88680 ||||||||| | || ||||| ||||| ||||| || || ||||| || || || | || Sbjct 1461 GCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAA 1520 Query 88681 AGGAATAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAAT 88740 || ||| ||| ||||| ||||||| || |||| || || || || Sbjct 1521 CGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGAT 1580 Query 88741 CATACCAACGTTAATACCAATTCCAGCGCGTT 88772 ||| ||||||||||||| || ||||||| Sbjct 1581 ACGACCCGCGTTAATACCAATACCTGCGCGTT 1612 >seq49234 Length=879 Score = 105 bits (116), Expect = 7e-18 Identities = 157/216 (73%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 11145 ATTGACGCTTTCGCAAAAATTCTAACTTATCGTAAAAGAAAGTAACATGACCAGAACCTA 11204 |||| || ||| | ||| || ||| |||| || || || ||||||||||| | ||||| Sbjct 339 ATTGGCGTTTT-GTAAATATAATAATTTATTATAGAA-AATGTAACATGACCTGTACCTA 396 Query 11205 AAATAAATTTAGAAGATATTTTAAAATCTTTAACGCGCTTACC-GTTTGCCACATGCTTA 11263 || | | ||| | ||||||||||| || | || ||||| | ||| || |||||| Sbjct 397 AA-TGTAGGTAGTACTGATTTTAAAATCATTGATTCGTTTACCAGCTTG-TACGTGCTTA 454 Query 11264 CGAACTATACCAAAAACACGCGGCAATTCACGGTATTCTGCGATTAAATGTTGATCAGCA 11323 ||||| ||| || ||||| ||||||||||||||||| || || | |||||| ||||| Sbjct 455 CGAACAGCACCGAATACACGTGGCAATTCACGGTATTCAGCCATAAGATGTTGGTCAGCT 514 Query 11324 AGTTCAGATACTAAAGTCAAATTAATACGAGTCATT 11359 | ||| |||| | ||| ||||| |||||| Sbjct 515 AATTCTTGTACTGGTACGAGATTGATACGGGTCATT 550 >seq34305 Length=2218 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 9570 CTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 9629 || |||||||||||| | || ||||| ||||||| || || || ||||||||||| Sbjct 595 CTGGGTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCG 654 Query 9630 AACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 9689 ||| ||||| || || || |||||||| | ||| |||||||| || || | | | ||| Sbjct 655 AACGGCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGC 714 Query 9690 ATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCA 9744 || || |||| || || |||||||| ||||| || || || |||||| Sbjct 715 GTCCATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCA 769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545062780680000