Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq35690 217 2e-51 seq28361 163 4e-35 seq60516 127 3e-24 seq2347 122 1e-22 seq43510 105 1e-17 seq51075 95.1 2e-14 >seq35690 Length=1912 Score = 217 bits (240), Expect = 2e-51 Identities = 389/561 (69%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 88174 GAAACCAAGCAACTCATCTTCTCCACAGGGGAAGCCGGATGCGGTAAGACCTTCATGGCC 88233 ||||| || || || |||||| |||| || ||||| || ||||| || |||| || Sbjct 1293 GAAACAAAACAGCTTATCTTCGCCACGGGCGAAGCGGGCTGCGGCAAAACCTGGATTAGT 1352 Query 88234 ACCGCCTACGCGGTAGAGC----GATTACTGGCCAAAGACGTCGATCGTATCATTGTCAC 88289 | || | || | |||| |||| | || || |||| | || || || || Sbjct 1353 GCTGCGAAAGCAGCAGAGGCCCTGATTCAT----AAGGATATCGACAGGATTATCGTTAC 1408 Query 88290 TCGCCCTGTCCTCTCCGCAGATGAAGACTTAGGCTTCCTGCCGGGCGATGTTGGTGAAAA 88349 ||||| || || || ||||| || | || ||||| || || ||| | || || Sbjct 1409 GCGCCCGGTGCTACAGGCGGATGAGGATCTGGGATTCCTTCCCGGTGATATCTCAGAGAA 1468 Query 88350 GTTCGCGCCTTACTTCCGACCTGTTTACGATGTGCTCTTAAAACGTCTGGGCAGC--CGT 88407 ||||| || || ||||| || |||||||| | || | |||||||| ||| || | | Sbjct 1469 ATTCGCCCCCTATTTCCGCCCGGTTTACGACATTCTGGTTAAACGTCTTGGC-GCATCCT 1527 Query 88408 TTCTTACAATACTGCCTGAAACCGGGTATAGACAAGGTTGAGATAGCTCCCTTCGCCTAT 88467 || | ||||| || ||| |||| || | ||| || || || || || || |||||| Sbjct 1528 TTATG-CAATATTGTCTGCGTCCGGAAATCGGCAAAGTGGAAATTGCGCCTTTTGCCTAT 1586 Query 88468 ATGCGTGGCCGCAACTTCGAGAACGCGGTCGTTATCTTAGATGAAGCTCAGAACACCACT 88527 ||||| ||||||| ||| || || ||||| || || | || ||||| |||||| || Sbjct 1587 ATGCGCGGCCGCACCTTTGAAAATGCGGTAGTGATTCTGGACGAAGCGCAGAACGTGACG 1646 Query 88528 GCTCAGCAGATGAAGCTCTTCCTGACCCGTATCGGGGAGAACTGT-ATCGTTATCGTTAA 88586 ||| ||||||||| | ||||||||||| | || || || ||| | || || ||||| Sbjct 1647 GCTGCGCAGATGAAAATGTTCCTGACCCGCCTTGGCGA-AAATGTCACGGTGATTGTTAA 1705 Query 88587 CGGTGACGTCACTCAGTGCGACTTACCTTCCGGGGTGAAGTCGGGACTGGCCGACGCATT 88646 ||| || | || |||||||| || || | |||||| || || || || ||||| | Sbjct 1706 CGGCGATATTACCCAGTGCGATTTGCCCGCTGGGGTGCCTTCCGGTCTCGCAGACGCGCT 1765 Query 88647 AGCCCGTTTCGAAGAAGACGAATTAGTCGGCATCGTTCGTTTTACGAAAGATGACTGTGT 88706 || ||||||||||| ||||| | || ||||| || ||||| ||||| || ||||| Sbjct 1766 GGCGCGTTTCGAAGAGGACGAGATGGTTGGCATTGTCCGTTTCGGCAAAGAGGATTGTGT 1825 Query 88707 GCGCTCTCCGCTTTGTCAGCG 88727 ||| || |||| |||||||| Sbjct 1826 GCGTTCCGCGCTGTGTCAGCG 1846 >seq28361 Length=3781 Score = 163 bits (180), Expect = 4e-35 Identities = 222/310 (72%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 99132 CTTAAGGAGCAATCATGGAACAGTATCAAGATTTAATGACTCGCGTAATGAGCGAAGGCG 99191 ||| | ||| || ||| ||||||||| || |||||| ||| ||| ||||||| Sbjct 2746 CTTCACGAGGAAAAATGAAACAGTATCTGGACTTAATGCGCTACGTGCTGAACGAAGGCA 2687 Query 99192 TGCCGAAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTT 99251 || || |||||||| || || || || || || ||||| || ||||||||||||| Sbjct 2686 CACCAAAATCTGACCGTACCGGTACAGGCACGCTTTCAATTTTTGGTCACCAGATGCGTT 2627 Query 99252 TCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTA 99311 | |||||||| || |||||||| ||||| |||||||| || || | || || || | Sbjct 2626 TTAATCTGCAGGATGGCTTTCCCCTGGTCACGACTAAAAAGTGCCATGTTCGCTCCATCA 2567 Query 99312 TTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATG 99371 |||| || ||||||||||| ||| |||| || ||||| | || | || || || Sbjct 2566 TTCATGAGCTGCTGTGGTTTCTGCAAGGGGACACCAACATTGGTTACCTGAAAGAAAACA 2507 Query 99372 GTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTA 99431 ||| |||| ||||| || ||| | | | ||| | || |||||||||||||| | Sbjct 2506 ATGTCTCTATCTGGGATGAGTGGGCAGATGAGCAGGGCAATCTGGGACCGGTATACGGCA 2447 Query 99432 AACAGTGGCG 99441 |||||||||| Sbjct 2446 AACAGTGGCG 2437 Score = 113 bits (124), Expect = 6e-20 Identities = 218/319 (68%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 99857 TCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATATTGCG 99916 || ||||||||||| || || | ||| | ||| | ||| |||||||||| || || Sbjct 2255 TCCTGTCAGCTTTACCAGCGTTCCTGCGACATTTTCCTGGGGCTGCCGTTTAACATCGCC 2196 Query 99917 TCATACGCTTTGTTGATCCACATGTTTGCACAGCAG-GCTAACATGACCGTGGGTGATTT 99975 || || || || | || ||| | || || ||| || | | || || ||||| || Sbjct 2195 AGCTATGCGCTGCTGGTGCATATGGTCGCGCAACAGTGCGATC-TGGAGGTCGGTGACTT 2137 Query 99976 CGTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTGGAACAAACCCGTACCCA 100035 |||||| | || || || || || |||| ||||| ||||| || | || || Sbjct 2136 TGTCTGGACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCCTGCA 2077 Query 100036 GTTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAAGCCAGACTCCAT 100095 | || | |||||| ||||||| |||||| | || ||||| ||||| | ||| | Sbjct 2076 ACTGACGCGCGAACCGCGTGCGTTACCGAAGCTGGTGATTAAACGCAAGCCTGCCTCGCT 2017 Query 100096 CTTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGACCCGCATCCTGCAATCAA 100155 || || ||| || || || || || ||||||| ||||| |||||||| || ||||| Sbjct 2016 GTTTGACTATCGTTTCGACGATTTTGAGATTGAAGGTTACGATCCGCATCCCGCCATCAA 1957 Query 100156 AGCACCGGTCGCGATATGA 100174 ||| ||||| ||| | ||| Sbjct 1956 AGCGCCGGTTGCGGTCTGA 1938 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 99570 AGATCGACCAAATCTCCAAGGCCATGGACCAGTTGAAAAACGACCCGGATAACCGTCGTA 99629 |||| || || ||| |||| | || || ||| | || ||| |||||| ||| || | Sbjct 2410 AGATTGATCAGATCACCAAAGTGATTGAACAGATCAAGCGCGATCCGGATTCCCGCCGCA 2351 Query 99630 TCATCGTGTCGGCATGGAACGTAGCTGACCTCGACGAAATGGCTTTAGCACCGTGCCACG 99689 |||| || ||||| |||||||| | || || || |||||||| | || |||||||| | Sbjct 2350 TCATTGTCTCGGCGTGGAACGTGGGCGAACTGGATGAAATGGCGCTGGCTCCGTGCCATG 2291 Query 99690 CATTCTTCCAGTTCTAC 99706 | || |||||||||||| Sbjct 2290 CCTTTTTCCAGTTCTAC 2274 >seq60516 Length=573 Score = 127 bits (140), Expect = 3e-24 Identities = 175/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 99197 AAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAAT 99256 ||| |||||||||| || ||||| ||| | ||||| |||||||||| ||||| Sbjct 83 AAGGAAGACCGTACCGGCACCGGCACCTACAGCGTGTTCGGTTACCAGATGCGCTTCAAC 142 Query 99257 CTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCAC 99316 ||| || ||||| || | || || || ||| || ||| || || || || || Sbjct 143 CTGGCCGATGGCTTCCCCATCGTCACCACCAAGAAGTGCCACCTGAAGTCCATCATCCAT 202 Query 99317 GAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTA 99376 ||||| |||||||||||| | || ||||||||| |||| || | || || || || || Sbjct 203 GAACTACTGTGGTTCCTGCAGGGTGATACCAATATCAAGTACCTGAAGGACAACGGCGTC 262 Query 99377 ACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAG 99436 | || |||||||| ||| || | | ||| ||||||| ||||||||||| | ||| Sbjct 263 AGCATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTATACGGCTACCAG 322 Query 99437 TGGCG 99441 ||||| Sbjct 323 TGGCG 327 >seq2347 Length=4848 Score = 122 bits (134), Expect = 1e-22 Identities = 174/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 99197 AAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAAT 99256 |||| ||||| || || ||||| ||| | ||||| |||||||| | ||| | Sbjct 2072 AAGAGCGACCGCACCGGCACCGGGACCTACAGCGTCTTCGGCTACCAGATGAGATTCGAC 2013 Query 99257 CTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCAC 99316 ||| || |||||||| ||||| || || ||| || || || | || || || ||| Sbjct 2012 CTGGCCGAGGGCTTTCCCCTGGTCACCACCAAGAAATGCCATCTGAGATCCATCATCCAC 1953 Query 99317 GAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTA 99376 |||||||||||||||||| | ||||| |||||| || || | || || ||||| || Sbjct 1952 GAACTGCTGTGGTTCCTGCAGGGCGAGACCAATATCCGCTACCTGAAGGACAATGGCGTG 1893 Query 99377 ACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAG 99436 | || |||||||||||| || | | || || || |||||||| ||||| | ||| Sbjct 1892 TCCATCTGGGACGAATGGGCCGACGAGAACGGTGAGCTGGGACCGGTCTACGGCTACCAG 1833 Query 99437 TGGCG 99441 ||||| Sbjct 1832 TGGCG 1828 >seq43510 Length=3912 Score = 105 bits (116), Expect = 1e-17 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 99242 CAGATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACAT 99300 |||||||||||| | || | || ||||| || ||||| || || ||| |||| ||| | Sbjct 1121 CAGATGCGTTTCGACCTCAACGACGGCTTCCCCCTGGTCACCACCAAGAAGCTG-CACCT 1063 Query 99301 GCGTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTT 99360 ||| ||||| | ||||| |||||||||||||||| ||||| ||||| || ||| | Sbjct 1062 GCGCTCGATCGTGCACGAGTTGCTGTGGTTCCTGAAGGGCGAGACCAACATCGCCTATCT 1003 Query 99361 AAATGATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACC 99420 || || || || | || |||||||| ||| | | ||||| ||||| || Sbjct 1002 CAAGGACAACAAGGTCAGCATCTGGGACGAGTGGGCCGATGCGCAGGGCGAACTCGGCCC 943 Query 99421 GGTATACGGTAAACAGTGGCGG 99442 ||| ||||| || ||||||||| Sbjct 942 GGTGTACGGCAAGCAGTGGCGG 921 >seq51075 Length=376 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 99242 CAGATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAG-CGCTGTCACAT 99300 |||||||| ||| | || ||||||||||| | | ||||| ||| |||| ||| | Sbjct 63 CAGATGCGCTTCGACCTCGCCGAAGGCTTTCCCGTCCTCACGACCAAGAAGCTG-CACCT 121 Query 99301 GCGTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTT 99360 ||| ||||| | ||||| |||||||||||||||| ||||| ||||| || ||| | Sbjct 122 GCGCTCGATCGTGCACGAGTTGCTGTGGTTCCTGAAGGGCGAGACCAACATCGCCTATCT 181 Query 99361 AAATGATAATGGTGT-AACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGAC 99419 || || || || | | || |||||||| ||| | | ||||| ||||| | Sbjct 182 CAAGGACAACAAGGTCAGCCATCTGGGACGAGTGGGCCGATGCGCAGGGCGAACTCGGCC 241 Query 99420 CGGTATACGGTAAACAGTGGCGG 99442 |||| ||||| || ||||||||| Sbjct 242 CGGTGTACGGCAAGCAGTGGCGG 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715297059260000