Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq43510 170 3e-37 seq60516 154 2e-32 seq28361 152 8e-32 seq2347 140 5e-28 seq51075 132 8e-26 seq43575 95.1 2e-14 >seq43510 Length=3912 Score = 170 bits (188), Expect = 3e-37 Identities = 154/194 (79%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||| |||||||||||||||||| | ||||||| |||||||| || ||||| | | Sbjct 1160 GACCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGTTTCGACCTCAAC 1101 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 || |||||||| ||||| ||||| || ||| | ||||| || || ||| | |||||| || Sbjct 1100 GACGGCTTCCCCCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCGTGCACGAGTTG 1041 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||||||||||| || || ||||||||| || || || || ||| ||||| ||| Sbjct 1040 CTGTGGTTCCTGAAGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTCAGCATC 981 Query 202729 TGGGACGAATGGGC 202742 |||||||| ||||| Sbjct 980 TGGGACGAGTGGGC 967 >seq60516 Length=573 Score = 154 bits (170), Expect = 2e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 ||| |||||||||||||||||||||| | | ||||||| ||||||||| || || Sbjct 83 AAGGAAGACCGTACCGGCACCGGCACCTACAGCGTGTTCGGTTACCAGATGCGCTTCAAC 142 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| |||| |||||||| | || ||||| || ||| ||||| || ||||| || Sbjct 143 CTGGCCGATGGCTTCCCCATCGTCACCACCAAGAAGTGCCACCTGAAGTCCATCATCCAT 202 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 || || |||||||||||| | || || ||||| |||| |||||||| || ||||| ||| Sbjct 203 GAACTACTGTGGTTCCTGCAGGGTGATACCAATATCAAGTACCTGAAGGACAACGGCGTC 262 Query 202723 ACTATCTGGGACGAATGGGC 202742 | ||||||||||| ||||| Sbjct 263 AGCATCTGGGACGAGTGGGC 282 >seq28361 Length=3781 Score = 152 bits (168), Expect = 8e-32 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||||||||| || ||||||| || | || || ||||||||| ||| | ||| Sbjct 2675 GACCGTACCGGTACAGGCACGCTTTCAATTTTTGGTCACCAGATGCGTTTTAATCTGCAG 2616 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 || ||||| || ||||| || || |||||| || | || || |||||||| |||||| Sbjct 2615 GATGGCTTTCCCCTGGTCACGACTAAAAAGTGCCATGTTCGCTCCATCATTCATGAGCTG 2556 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||||| ||| |||||||||||||||| |||||||||| || ||| ||| ||||| Sbjct 2555 CTGTGGTTTCTGCAAGGGGACACCAACATTGGTTACCTGAAAGAAAACAATGTCTCTATC 2496 Query 202729 TGGGACGAATGGGC 202742 ||||| || ||||| Sbjct 2495 TGGGATGAGTGGGC 2482 Score = 143 bits (158), Expect = 4e-29 Identities = 220/314 (70%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 203290 CTATCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATC 203349 || || |||||| | || ||||| | ||| | ||| | || |||||||||||||| Sbjct 2258 CTCTCCTGTCAGCTTTACCAGCGTTCCTGCGACATTTTCCTGGGGCTGCCGTTTAACATC 2199 Query 203350 GCCTCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAGGAG 203409 ||| ||||| | ||| | ||||| || || ||| | | ||| || || || Sbjct 2198 GCCAGCTATGCGCTGCTGGTGCATATGGTCGCGCAACAGTGCGATCTGGAGGTCGGTGAC 2139 Query 203410 TTCGTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTG 203469 || |||||||| ||||| ||||| || || || |||||| ||||||||||| || ||| Sbjct 2138 TTTGTCTGGACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCCTG 2079 Query 203470 CAGTTAACTCGTGACCCGCACCCATTACCGCGTCTGAAATTCAAACGTAAGCCCGAGTCT 203529 || | || || || |||| | |||||| ||| | ||||| ||||| | || Sbjct 2078 CAACTGACGCGCGAACCGCGTGCGTTACCGAAGCTGGTGATTAAACGCAAGCCTGCCTCG 2019 Query 203530 ATCTTCGACTACCAGTTCGAAGACTTTGAAATCGAAGGCTACGTTTCCCACGACGCCATC 203589 | || ||||| | ||||| || ||||| || ||||| |||| | | || ||||||| Sbjct 2018 CTGTTTGACTATCGTTTCGACGATTTTGAGATTGAAGGTTACGATCCGCATCCCGCCATC 1959 Query 203590 AAAGCACCGGTTGC 203603 ||||| |||||||| Sbjct 1958 AAAGCGCCGGTTGC 1945 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/135 (75%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 203019 TGACCAAATCACCAAAGTCATCGACCAGCT---GCGTAACGATCCGGATAACCGCCGCAT 203075 ||| || ||||||||||| || || ||| | ||| |||||||||| ||||||||| Sbjct 2406 TGATCAGATCACCAAAGTGATTGAACAGATCAAGCG---CGATCCGGATTCCCGCCGCAT 2350 Query 203076 TATTGTCAGCGCATGGAATGTCGGTGAGTTGGACCAGATGGCGTTAGCACCGTGTCATTC 203135 |||||| || ||||| || || || |||| | |||||| | || ||||| ||| | Sbjct 2349 CATTGTCTCGGCGTGGAACGTGGGCGAACTGGATGAAATGGCGCTGGCTCCGTGCCATGC 2290 Query 203136 TTTCTTCCAGTTCTA 203150 || ||||||||||| Sbjct 2289 CTTTTTCCAGTTCTA 2275 >seq2347 Length=4848 Score = 140 bits (154), Expect = 5e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 |||| ||||| ||||||||||| || | | | ||||| ||||||| | || ||| Sbjct 2072 AAGAGCGACCGCACCGGCACCGGGACCTACAGCGTCTTCGGCTACCAGATGAGATTCGAC 2013 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| |||| ||||| || ||||| ||||| || || || || | || ||||| ||| Sbjct 2012 CTGGCCGAGGGCTTTCCCCTGGTCACCACCAAGAAATGCCATCTGAGATCCATCATCCAC 1953 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 || ||||||||||||||| | || || ||||| ||| | |||||||| || || || || Sbjct 1952 GAACTGCTGTGGTTCCTGCAGGGCGAGACCAATATCCGCTACCTGAAGGACAATGGCGTG 1893 Query 202723 ACTATCTGGGACGAATGGGC 202742 | ||||||||||||||||| Sbjct 1892 TCCATCTGGGACGAATGGGC 1873 Score = 120 bits (132), Expect = 5e-22 Identities = 146/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 203296 TGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATCGCCTCG 203355 || ||| ||||||||||| |||||| ||||| | |||||||| || ||||||||| Sbjct 1643 TGCCAGCTGTATCAGCGCTCCGCCGACATCTTCCTCGGCGTGCCCTTCAACATCGCCAGC 1584 Query 203356 TATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTG--GCCGAG-GAGTTC 203412 ||||| | ||||| |||||| || ||||||| | | || |||| | || ||| Sbjct 1583 TATGCGCTGCTGACCCTGATGGTGGC---CCAGGTCACCGGGCTGCAGCCGGGCGAATTC 1527 Query 203413 GTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTGCAG 203472 ||||||| ||||||||| ||||| ||| |||| || ||||||||| || ||||||| Sbjct 1526 ATCTGGACCGGCGGTGATTGCCATCTCTATGCCAATCACCTGGAGCAGACCGATCTGCAG 1467 Query 203473 TTAACTCGTGACCCGC 203488 | || || || |||| Sbjct 1466 CTGACCCGCGAGCCGC 1451 >seq51075 Length=376 Score = 132 bits (146), Expect = 8e-26 Identities = 147/195 (75%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 || || |||||| |||||||| | | ||||| || |||||||| || ||||| || Sbjct 24 GATCGCACCGGCGTCGGCACGCTGAGCGTCTTCGGCGCGCAGATGCGCTTCGACCTCGCC 83 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 |||||||| || | | || || || ||| | ||||| || || ||| | |||||| || Sbjct 84 GAAGGCTTTCCCGTCCTCACGACCAAGAAGCTGCACCTGCGCTCGATCGTGCACGAGTTG 143 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCA-CTAT 202727 |||||||||||||| || || ||||||||| || || || || ||| ||||| | || Sbjct 144 CTGTGGTTCCTGAAGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTCAGCCAT 203 Query 202728 CTGGGACGAATGGGC 202742 ||||||||| ||||| Sbjct 204 CTGGGACGAGTGGGC 218 >seq43575 Length=1686 Score = 95.1 bits (104), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 2255 TGGCGGGTTACTCAAGCGGC-AACGAGAGCAGACTGTAAATCTGTTGACTTCGGTCTTCG 2313 ||| ||| ||| |||||||| |||| | |||||||||||||||| || ||| | ||||| Sbjct 369 TGGAGGGATACCCAAGCGGCCAACGGGGGCAGACTGTAAATCTGCTGGCTTACGCCTTCG 310 Query 2314 GTGGTTCGAGTCCACCACACGCCACCAGTTAT 2345 ||||||||| |||||| | | ||||||||||| Sbjct 309 GTGGTTCGAATCCACCTCCCTCCACCAGTTAT 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787036023800000