Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031011.1 Length=168993 Score E Sequences producing significant alignments: (Bits) Value seq33108 181 1e-40 seq31280 122 9e-23 seq49234 107 2e-18 seq34305 95.1 1e-14 seq50823 87.8 2e-12 >seq33108 Length=3479 Score = 181 bits (200), Expect = 1e-40 Identities = 150/183 (82%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 126778 TTACAAACTCTCGGTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAGA 126837 ||| ||||| || ||||||||||| || || || || ||||| ||||| || ||||| || Sbjct 2968 TTATAAACTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGA 2909 Query 126838 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 126897 |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 2908 ATTAAAGCGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATG 2849 Query 126898 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 126957 || || || |||||||| |||||||| ||||| ||||||||||| | ||| || || || Sbjct 2848 TTTCACGGCGTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCC 2789 Query 126958 TTC 126960 ||| Sbjct 2788 TTC 2786 >seq31280 Length=10079 Score = 122 bits (134), Expect = 9e-23 Identities = 269/401 (67%), Gaps = 2/401 (0%) Strand=Plus/Plus Query 38199 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 38258 || || || ||||| || ||||| ||||| | |||||| |||| || || ||| ||| Sbjct 1342 TTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTT 1401 Query 38259 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 38317 |||| || | || |||| ||||||| |||||| || ||||| | ||| || || || Sbjct 1402 TTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGC 1460 Query 38318 GCCGCCACGAATTCCGCCCTGTGAACATGAGTTAACTGCAGCCTGAAAATGTTTCCAAAA 38377 ||||||||| | |||||||| ||||| || || || || | ||| || || || | || Sbjct 1461 GCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAA 1520 Query 38378 AGGAATAACACCAGGATGGCATACATCACCCATGCCAATCTCAGAACCTTCGGCACGAAT 38437 || ||| ||| | |||| | | ||||| || |||| || || || || Sbjct 1521 CGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGAT 1580 Query 38438 CATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGA 38497 ||| ||||||||||||| || ||||||| || | |||| ||||| | ||| Sbjct 1581 ACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAATAGCGCTGGA 1640 Query 38498 AGCCTTATTGATAGACTTCAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTG 38557 | | ||||| || | || || || ||||| | ||||| || || ||||| Sbjct 1641 GGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACTG 1700 Query 38558 TCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCA 38598 || || || ||||| || | ||| || || || |||| Sbjct 1701 ACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCA 1741 >seq49234 Length=879 Score = 107 bits (118), Expect = 2e-18 Identities = 155/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 128853 ATTGACGCTTTCGCAAAAATTCTAACTTATCGTAAAAGAACGTAACATGACCAGAACCTA 128912 |||| || ||| | ||| || ||| |||| || || || ||||||||||| | ||||| Sbjct 339 ATTGGCGTTTT-GTAAATATAATAATTTATTATAGAA-AATGTAACATGACCTGTACCTA 396 Query 128913 AAATAAACTTGGAAGATATTTTAAAATCTTTAACCCGTTTACCATTTGCCACATGTTTAC 128972 || | | | | | ||||||||||| || | ||||||||| | || || |||| Sbjct 397 AA-TGTAGGTAGTACTGATTTTAAAATCATTGATTCGTTTACCAGCTTGTACGTGCTTAC 455 Query 128973 GAACTATACCAAAAACACGTGGCAATTCACGGTATTCTGCGATTAAATGTTGATCAGCAA 129032 |||| ||| || ||||||||||||||||||||||| || || | |||||| ||||| | Sbjct 456 GAACAGCACCGAATACACGTGGCAATTCACGGTATTCAGCCATAAGATGTTGGTCAGCTA 515 Query 129033 GTTCAGATACTAAAGTCAAATTAATACGAGTCATT 129067 ||| |||| | ||| ||||| |||||| Sbjct 516 ATTCTTGTACTGGTACGAGATTGATACGGGTCATT 550 >seq34305 Length=2218 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 126787 CTCGGTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 126846 || |||||||||||| | || || || ||||||| || || || ||||||||||| Sbjct 595 CTGGGTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCG 654 Query 126847 AACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 126906 ||| ||||| || || || |||||||| | ||| |||||||| || || | | | ||| Sbjct 655 AACGGCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGC 714 Query 126907 ATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCA 126961 || || |||| || || |||||||| ||||| || || || |||||| Sbjct 715 GTCCATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCA 769 >seq50823 Length=3276 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/187 (72%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 128885 TAAAAGAACGTAACATGACCAGAACCTAAAATAAACTTGGAAGATATTTTAAAATCTTTA 128944 ||||| || |||||||| || | || | |||| | | | |||||||||||| ||| Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 128945 ACCCGTTTACCATTTGCCACATGTTTACGAACTATACCAAAAACACGTGGCAATTCACGG 129004 | ||| ||| | || ||||| | ||| |||||| |||||||| |||||||| Sbjct 188 A-TATTTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 129005 TATTCTGCGATTAAATGTTGATCAG-CAAGTTCAGATACTAAAGTCAAATTAATACGAGT 129063 ||||| || || | ||||||||| | ||| | | || | || | ||||| || ||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACT-AAATTTATCCGAGT 305 Query 129064 CATTTTA 129070 ||||||| Sbjct 306 CATTTTA 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539769016964000