Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031022.1 Length=108050 Score E Sequences producing significant alignments: (Bits) Value seq33499 560 7e-155 seq107223 82.4 5e-11 seq33108 82.4 5e-11 >seq33499 Length=26748 Score = 560 bits (620), Expect = 7e-155 Identities = 633/848 (75%), Gaps = 0/848 (0%) Strand=Plus/Minus Query 60362 TTACTTGTTACGCATATCCATAATCATCTGGCCATCGTAACCAGTGCCAACTACTGTTTG 60421 ||| |||||||| ||||||||||| || || ||||| || |||| |||||||| Sbjct 24100 TTATTTGTTACGAGCATCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTG 24041 Query 60422 AGGTACACCGCCTTGATATTTCTGAGCACGAATCATTTCAACTTCTAGTTGTTTCCAGCG 60481 |||||||| ||||| ||||||| |||||| ||||||||||||| ||||||||||| || Sbjct 24040 TGGTACACCACCTTGGTATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACG 23981 Query 60482 AATCATCTCAGGAGTAATAGTACGTTGCAGAGCGGCGTTAGCTTCGGCTTCCTTCTTAGC 60541 ||||||||| ||||| || || |||| | ||||||||| ||||| || | ||| Sbjct 23980 AATCATCTCTGGAGTGATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGC 23921 Query 60542 TGCGTACAGTTTAGCATCTGCATCACGTTCGTTTGCAATAGCTTGGTTGTTACGAGCTTC 60601 || || | ||||||||||||||| ||||||||||| |||| || ||||| ||||| Sbjct 23920 AGCATATAATTTAGCATCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTC 23861 Query 60602 ACGATCTGCTTCTGCTTGTTTAACCTTCTGCTGTGCTTCTTGTTCAACACGAGCCAACTC 60661 ||||| || ||||| | ||||| ||||||| ||||| | || || ||| || Sbjct 23860 TCGATCAGCCTCTGCCTTCTTAACTGCTTGCTGTGTTTCTTTAGCTACTCGGTCCAGATC 23801 Query 60662 AGCTTTCGCAGCATTAACTTGTTCCTCACGAACTTTGGTATTCTGTACCTGTTCCACGAT 60721 ||| | || || ||||| ||||| ||||||| || ||||| |||||| | || ||| Sbjct 23800 AGCCTGTGCTGCGTTAACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCATGAT 23741 Query 60722 TACAGGCGGCAAAGTAATATCCTGAAGGAACACTTGCTTAACTGTGTAACCATAAGGGCG 60781 |||| ||||| || ||||| || | ||| | || || || || ||||||||||| || Sbjct 23740 TACATCAGGCAAGGTGATATCTTGCAAGAAGATTTCTTTTACAGTATAACCATAAGGACG 23681 Query 60782 TGCATACTCTTCAACTTCCTGTTGAATTGCGGTTTGTAATTGAGCCTGGATTTTAGCATC 60841 ||| || |||||| ||| || | || || || || ||||| || | ||| | Sbjct 23680 TGCGTAGGCTTCAATTTCAGCTTTTACTGAATCCTGCAACTGCGCCTGAATCTCAGCGTT 23621 Query 60842 AAACAAATCTTGTGCTTTAGGAACAGACTTACCGAACTCACGAATAGTGGACAGTAATTT 60901 |||||||| |||||||| || || || ||||| ||||| || | |||||| | | || Sbjct 23620 GAACAAATCCTGTGCTTTCGGGACTGATTTACCAAACTCTCGGACAGTGGATAAAAGCTT 23561 Query 60902 TTCAGTTACATATTTGTCTAATGCTTGATCCTGGGTACCTGCGTTAATACGGTTAATCGG 60961 || |||||||| || | ||||| || || || ||||| ||||| ||||| || || Sbjct 23560 TTGCTCAACATATTTATCCAGAGCTTGCTCTTGAGTGCCTGCATTAATTCGGTTCATAGG 23501 Query 60962 TGCCTTAGAACCATCAAACTGCAACATAACAGTCAGGTCAACAGTGGATTTAAACTTATC 61021 |||||||||||||||||||||||||||||| |||| || || || |||||||||||||| Sbjct 23500 TGCCTTAGAACCATCAAACTGCAACATAACGGTCATATCCACTGTTGATTTAAACTTATC 23441 Query 61022 CTGACTAGGAACCTGAAGTTTATCTAATTTTACAGCAATGTCTTTTGTACTAAAAGTATC 61081 |||||| || || || | |||||| || ||| || ||||||||||| ||||| || Sbjct 23440 CTGACTCGGTACTTGCAATTTATCATATGTTATTTTGATATCTTTTGTACTGAAAGTCTC 23381 Query 61082 GAAAGATGCAAATGGGTTTACAAGATGAAAACCAGGTAATACAGGATTAGGGTCTACTTT 61141 || |||||||||||| || | ||| || || || |||||||||||| | ||||| Sbjct 23380 AAAGCTTGCAAATGGGTTAACCACATGGAACCCTGGCTTTACAGGATTAGGATTAACTTT 23321 Query 61142 ACCCAGAAATGTTTGGGTTTTAACCGTACCATCAGAAACAATAGTATATGAATTAAAAGC 61201 ||||| ||| ||||| ||||| || |||||||| || || |||| ||||| | ||| Sbjct 23320 ACCCATAAAGGTTTGTGTTTTTACTGTACCATCTTGCACGATGATATAGGAATTTAGAGC 23261 Query 61202 TAGGATTA 61209 | ||||| Sbjct 23260 CAAGATTA 23253 >seq107223 Length=315 Score = 82.4 bits (90), Expect = 5e-11 Identities = 129/179 (72%), Gaps = 8/179 (4%) Strand=Plus/Minus Query 55488 ATTACATCGC-CTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGT 55546 |||||||||| ||| | || ||||| | || || || ||||| |||||||||||| Sbjct 254 ATTACATCGCGCTGTGGAAC-GTACGGTTGATCACATCAAGTTGTTGCTCACGAGTCAGT 196 Query 55547 GCGTTAA-AACGT--ACAGCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCA 55603 |||| || || ||||| || || || ||||| || || ||||| || || ||||| Sbjct 195 ---TTAATAAAGTTAACAGCATAACCGGATACACGAATGGTCAATTGTGGATAGTTTTCT 139 Query 55604 GGATGTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTG 55662 || || | | ||||||| ||| || |||||| ||||| || ||||| || || || Sbjct 138 GGGTGCTCCATCGCATCCATAAGTTGTTCACGATCAAACACGTTCACATTCAGATGATG 80 >seq33108 Length=3479 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 55502 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAAACGTACA 55561 ||||| ||||| ||| ||||| |||||||||| | ||||| | ||||| || || Sbjct 2955 GTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCGCACG 2896 Query 55562 GCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATCC 55621 || ||||| |||||||| || || | || || || || |||||||||||| || || Sbjct 2895 GCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGCGTCT 2836 Query 55622 AAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCTCCCTC 55671 ||| ||||| | | || || || |||| |||||| || || || Sbjct 2835 TCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTC 2786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345086320501300