Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031023.1 Length=32649 Score E Sequences producing significant alignments: (Bits) Value seq115158 1088 0.0 seq29199 477 2e-130 seq123790 279 1e-70 seq32415 259 1e-64 seq125381 93.3 9e-15 >seq115158 Length=1188 Score = 1088 bits (1206), Expect = 0.0 Identities = 788/903 (87%), Gaps = 6/903 (1%) Strand=Plus/Plus Query 18010 AATGATTAATTTTAAATTACGACTAAAAAATAAAGCTACATTAGTAGCTCTTGTCTCAGC 18069 ||||||||||||||||||||| | |||||||| ||||| ||||||||||| ||||||| Sbjct 286 AATGATTAATTTTAAATTACGTTTGCAAAATAAAACTACACTAGTAGCTCTTATCTCAGC 345 Query 18070 AGTATTCCTTATGCTGCAACAATTCGGGCTTAACATTCCACACAATATCCAAGACGGTGT 18129 ||||||||||||| |||||||||| |||||| | |||||||||||||||||||||| ||| Sbjct 346 AGTATTCCTTATGTTGCAACAATTAGGGCTTGAAATTCCACACAATATCCAAGACGCTGT 405 Query 18130 AAATACATTCATTGCAATTTTGGTAATTCTCGGAATCGTTACTGACCCAACAACTAAAGG 18189 |||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| || Sbjct 406 AAATACATTCATTGCAATTTTGGTTATCCTCGGAATCGTTACCGACCCAACCACTAAGGG 465 Query 18190 AATCGCTGATAGCGAACGAGCATTGAATTACCAAGAGCCACTAGACGATAAGGAAGAAAA 18249 || || || |||||||||||||||| || || | ||||||||||| ||||||| ||| Sbjct 466 GATTGCAGACAGCGAACGAGCATTGAGCTATGAACAACCACTAGACGAAAAGGAAGGAAA 525 Query 18250 ATAGTATGAGCG-TACAACAATCTATTGTAAATTGGTTTGTTAGCCATCGAGGGCTATTG 18308 |||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 526 ATAGTATGAGCGATACAACAATCTATTGTAAATTGGTTTGTTAACCATCGAGGCAAATTG 585 Query 18309 ACCTATTCAATGTATGGGTCACGGAATGGCTCAGACGGTACAGCTGACTGCTCTGGTTCT 18368 ||||||||||||||||||||||| || || |||||||||||||||||||||||||||| Sbjct 586 ACCTATTCAATGTATGGGTCACGCAACGGAGCAGACGGTACAGCTGACTGCTCTGGTTCC 645 Query 18369 ATGTCACAAGCCCTGAAAGAAGCTGGTATTGGTATTCAAGGGTTGCCATCTACTGTCACT 18428 || ||||||||||| |||||||||||||||||||||||||| | ||||||||||| || Sbjct 646 ATATCACAAGCCCTAAAAGAAGCTGGTATTGGTATTCAAGGTCTACCATCTACTGTTACA 705 Query 18429 CTTGGTCAACAACTTGCTAAAAATGGATTTTATCGTGTAAGTATTAATCAGGATTGGGAC 18488 || |||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| Sbjct 706 CTAGGTCAACAACTTGCCAAAAATGGATTCTATCGAGTAAGTATTAATCAAGATTGGGAT 765 Query 18489 GCCTTGACAGGAGATATCGTAATGATGTCGTGGGGTGCTGACATGTCACAATCTGGTGGT 18548 || |||||||| ||||| || | ||||| |||||| |||| ||||| |||||| || Sbjct 766 GCTTTGACAGGCGATATTGTGTTAATGTCATGGGGTTCTGATATGTCCACATCTGGCGGA 825 Query 18549 GCAGGTGGTCACGTTGGTGTTATGATGGATAGCGTAAACTTTATTAGTTGTGATTATTCA 18608 || || || ||||||||||| ||||||||| | ||||||||||||| ||||||||| Sbjct 826 GCTGGAGGGCACGTTGGTGTCATGATGGATGCTACATACTTTATTAGTTGCGATTATTCA 885 Query 18609 ACTCAAGGAGCAGTAGGCCAAGCTATCAATACGTATCCTTGGAATGATTACTATGCAGCA 18668 |||||||| ||| || |||||||||||||| || || |||||||| ||||||||||| Sbjct 886 ACTCAAGGGGCACCTGGGCAAGCTATCAATACTTACCCGTGGAATGACTACTATGCAGCG 945 Query 18669 AACAAACCAAATTATATCGAAGTTTGGCGTTATTCTGACACTGCACCACAAACCAACAAC 18728 ||||| || |||||||| || ||||||||||||||||||||||| |||||||||||| Sbjct 946 AACAAGCCTGCATATATCGAGGTGTGGCGTTATTCTGACACTGCACCGCAAACCAACAAC 1005 Query 18729 CAAGCTAATACAGCAG-TAG-CGCCACAACAGAAGGCTTACTATGAAGCCAACGAGGTCA 18786 |||||||||||||||| ||| | |||||||| ||||||||||||||||| || || || Sbjct 1006 CAAGCTAATACAGCAGCTAGACACCACAACAAAAGGCTTACTATGAAGCTAATGAAGTTC 1065 Query 18787 AATATGTTAAT-GGCATTTGGCAGATTAGATGTGACTATTTGGCACC-CGTTGGATTTGA 18844 ||| |||||| || ||||||||||| | |||||||||||||||||| |||||||| || Sbjct 1066 AATTCGTTAATGGGAATTTGGCAGATCAAATGTGACTATTTGGCACCTGGTTGGATTCGA 1125 Query 18845 TTGGGTTAACTAATTTTCGGCTCAGTATAAACTAAGT-GAACGCAAACAAAGCGGTGTCA 18903 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1126 CTGGGTTAACTAATTTTCGGCTCAGTATAAACTAAGTGGAACGCAAACAAAGCGGTGTCA 1185 Query 18904 TGC 18906 ||| Sbjct 1186 TGC 1188 >seq29199 Length=407 Score = 477 bits (528), Expect = 2e-130 Identities = 347/401 (87%), Gaps = 1/401 (0%) Strand=Plus/Plus Query 24095 TATGAGTTTAGATCAAACAGCTAGACAGATGCGACAGCTATATATGACTACTAGTGATAA 24154 ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 1 TATGAATTTAGATCAAACAGCTAGACAGATGCGACAGCTATATATGACCACTGCCAATAA 60 Query 24155 ATACTGCGAGAAGCACAATAGAAACTTTGTCACTATTCAGCTACCAAACAGCAAGCCATA 24214 ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| Sbjct 61 ATACTGCGAGAAGCATAATCGAAACTACGTCACTATTCAGCTACCAAACAGCAAGCCATA 120 Query 24215 CACTGTATGTGAGACGTGCCATCGTGAAGAGCAAGAGCGACAGAATTCTATTAAAGCGCA 24274 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 121 CACTGTATGTGAGACGTGCCATCGTGAAGAGCAAGAGCGACAGAATTCTATTAAAGCACA 180 Query 24275 GGAACAATATGAGCGTGAGCAAGAACAGAAACGTCTATACTTCCTAAAGGATTTTAGTTT 24334 ||||| | ||||||||||||||| || ||||| ||||||| || || ||||| || || Sbjct 181 AGAACAGTTTGAGCGTGAGCAAGAGCAAAAACGCTTATACTTTCTCAAAGATTTCAGCTT 240 Query 24335 GATGGATGATGATTTGAGAAGTGCCAGCTTTGAAAATTATCACGCTGTTACCAAAGAGCA 24394 ||||||||||||||||| |||||| |||||||||| || || ||||||||||||||||| Sbjct 241 GATGGATGATGATTTGA-AAGTGCTAGCTTTGAAACCTACCATGCTGTTACCAAAGAGCA 299 Query 24395 AAAAGAGGACTTGAAAAACGTTAGAAGCCAGCTTAAAGGCTACATTGATGGTCAAGACTA 24454 ||| || |||||||| || ||| |||| || || | ||| ||| | || || || || || Sbjct 300 AAAGGAAGACTTGAAGAATGTTCGAAGTCAACTCAGAGGATACTTAGACGGACAGGATTA 359 Query 24455 CAACATTGTGCTTATCGGTGATACTGGAGTGGGCAAAAGTC 24495 |||||| || || || ||||| || || || ||||| |||| Sbjct 360 CAACATAGTTCTAATAGGTGACACGGGTGTCGGCAAGAGTC 400 >seq123790 Length=336 Score = 279 bits (308), Expect = 1e-70 Identities = 210/246 (85%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 31389 TATACAGAGATTGGGATAATGACACCTCTGAAAGTAATCCAATTAGAGGGACTTCTCTCT 31448 |||||||| ||||| | | ||||||| || ||||||||||||||||| ||||| ||| Sbjct 16 TATACAGAAATTGGCAGTTTAACACCTCGCAAGGTAATCCAATTAGAGGGTCTTCTGTCT 75 Query 31449 AGAGAATTATTCGGAAAGATAGCTAGGTACGTCTTTAATAAGTATGAATGGCCAGAAAGC 31508 ||||| ||||||| |||||||| | |||||||||||||||||||||||||||||||||| Sbjct 76 AGAGAGCTATTCGGTAAGATAGCGAAGTACGTCTTTAATAAGTATGAATGGCCAGAAAGC 135 Query 31509 CTAGACGAAGAGGTTGATCGGATTTATTTAGAATATCGCACCAAAGGTGATCTAGGTCTT 31568 ||||| ||||| |||||| | || ||||||||||||||||| |||||| ||||||||| | Sbjct 136 CTAGATGAAGA-GTTGATAGAATCTATTTAGAATATCGCACTAAAGGTAATCTAGGTCGT 194 Query 31569 GATaaaaaaaGTGTTAAACGGACGCTATTCAAAGCGATTTCAATGGGCTTATAGTGGTTC 31628 |||||| ||||||||||||| || |||| |||||||| || |||||||| | ||||| Sbjct 195 GATAAAGAAAGTGTTAAACGCACACTATATAAAGCGATGTCTATGGGCTTGTGAGGGTTC 254 Query 31629 GAATCC 31634 || ||| Sbjct 255 GACTCC 260 Score = 123 bits (136), Expect = 5e-24 Identities = 78/83 (94%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 31806 GAGGGTTCGACTCCCTCGCTCGCTGTTAGTCTGTCATGACTAGGTAAtttttttGACACT 31865 ||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||| Sbjct 247 GAGGGTTCGACTCCCTCGCTCGCTGTTAGTCTGTCGTGACTAGG-AAATTTTTTGACACT 305 Query 31866 CGCATCGCTGACAGACCGATGCA 31888 || ||||||||||||||||| || Sbjct 306 CGTATCGCTGACAGACCGATACA 328 >seq32415 Length=302 Score = 259 bits (286), Expect = 1e-64 Identities = 145/146 (99%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 25046 AATCAGAACGTTCGAGAACACGCCTAAAATCGTCTGTAATCAATTTAAAAGTGTGGGTGG 25105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 AATCAGAACGTTCGAGAACACGCCTAAAATCGTCTGTAATCAATTTAAAAGTGTGGGTGG 243 Query 25106 TATAAATTATCTAGTTACCACTTAAAAACGATAAGAGACCCCTAAAATTGAGAATTAGGG 25165 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 242 TATAAATTATCTAGTTACCACTTAAAAACGATAAGAGACCCCTTAAATTGAGAATTAGGG 183 Query 25166 GCATTCAAAACaaaaaaaGGAAGACA 25191 |||||||||||||||||||||||||| Sbjct 182 GCATTCAAAACAAAAAAAGGAAGACA 157 Score = 205 bits (226), Expect = 2e-48 Identities = 143/163 (88%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 24803 GAAGACAGGACTTGGAACTACTAATGAGCATGTTTATCAATTTAAAACTAATCAAGACAA 24862 |||||||||||| ||||| || ||||| ||||||||||||||||||||||| |||||||| Sbjct 163 GAAGACAGGACTGGGAACAACCAATGAACATGTTTATCAATTTAAAACTAAACAAGACAA 104 Query 24863 AAGGATGATGTTATGACTGAAACAGAAGTTAAACTAAAACTATTCGAAGACTACGAGCGC 24922 |||||||||||||||||||||||||||| ||| ||| || || || ||||| |||||| Sbjct 103 GAGGATGATGTTATGACTGAAACAGAAGTAAAAACAAAGCTCTTTGAGGACTATGAGCGC 44 Query 24923 ATTCATGGTCTTGTAGTATCAGAAGGGCACAAACAGAAAATGA 24965 |||||||| |||||| | ||| ||| |||||| |||||||||| Sbjct 43 ATTCATGGCCTTGTATTCTCACAAGAGCACAAGCAGAAAATGA 1 >seq125381 Length=275 Score = 93.3 bits (102), Expect = 9e-15 Identities = 186/275 (68%), Gaps = 13/275 (5%) Strand=Plus/Minus Query 31075 TTGACAATGTGATTAAAGAGCGTTCTAAGTTATCACCCGCGACATTAGACGATATGCGTG 31134 |||| || ||| ||||||||||||| || ||||||| | ||||| ||||||||| ||| Sbjct 273 TTGATAACGTGGTTAAAGAGCGTTCGAA-CTATCACCTTCAACATTGGACGATATGAGTG 215 Query 31135 AGTATATCACGGACGGACTCGCAAACGACTTAGAGGATTATCTATCAGAGCACTATTTT- 31193 ||||| | ||| |||| || | || |||||| || ||||| ||||| |||||| | Sbjct 214 AGTATCTTACGAACGGCCTAGTGAATGACTTACGAGAGTATCTGGCAGAGAACTATTCTG 155 Query 31194 -----AGTAGCTCCGCAAAGTGTCGGCCAGATACCGACAAGAGAAATGCTGGACTGCCTG 31248 ||| | || | || ||||||| | || || || ||||| ||| || Sbjct 154 ACAGAAGTGGGTCATCTAA------GCCAGATGCTGATAAAGCTAACGCTGGGCTGACTA 101 Query 31249 AGGAACTCTTTAAACAGTATTGCGAGGAAATTAAATCATTAAAAGCTAAATACCCAAACA 31308 ||||||| || | || | | ||||||| || |||| ||| | |||| ||| Sbjct 100 AGGAACTTTTCCGAGAGCTTCGAAAGGAAATCGAAGAGTTAAGAGCAGCACACCCTAACC 41 Query 31309 GCTTCACAGCTTACATCATGGATGTTAAAGGGTGC 31343 | | ||| || | ||||| || ||||| ||| Sbjct 40 GTAACGCAGAATATGTTATGGAAGTGAAAGGATGC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104193729894600