Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031030.1 Length=170788 Score E Sequences producing significant alignments: (Bits) Value seq33108 129 6e-25 seq31280 120 3e-22 seq72596 89.7 6e-13 >seq33108 Length=3479 Score = 129 bits (142), Expect = 6e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 60709 TTACAAACTCTTGGTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 60768 ||| ||||| | || || ||||| || || ||||| ||||| ||||| || ||||| || Sbjct 2968 TTATAAACTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGA 2909 Query 60769 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 60828 |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 2908 ATTAAAGCGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATG 2849 Query 60829 CTTAACTGCATCTTCCAGAGT 60849 || || || |||||||| || Sbjct 2848 TTTCACGGCGTCTTCCAGCGT 2828 >seq31280 Length=10079 Score = 120 bits (132), Expect = 3e-22 Identities = 253/375 (67%), Gaps = 2/375 (1%) Strand=Plus/Plus Query 139476 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 139535 || || || ||||| || ||||| ||||| | |||||| |||| || || ||| ||| Sbjct 1342 TTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTT 1401 Query 139536 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 139594 |||| || | || |||| ||||||| |||||| || ||||| | ||| || || || Sbjct 1402 TTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGC 1460 Query 139595 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAA 139654 ||||||||| | || ||||| ||||| ||||| || || ||||| || || || | || Sbjct 1461 GCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAA 1520 Query 139655 AGGAATAACACCAGTATGACGTACTTCACCCATGCCAATTTTAGAACCTTCAGCACGAAT 139714 || ||| ||| ||||| ||||||| || ||| || || || || Sbjct 1521 CGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGAT 1580 Query 139715 CATACCAACATTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGA 139774 ||| | ||||||||||| || ||||||| || | |||| ||||| | ||| Sbjct 1581 ACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAATAGCGCTGGA 1640 Query 139775 AGCCTTATTGATAGACTTCAATGAATCTCCTGCCTCAATAACGACGCATGAACTAAACTG 139834 | | ||||| || | || || || ||||| | ||| || || || ||||| Sbjct 1641 GGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACTG 1700 Query 139835 CCGAGTTGGAGTACG 139849 || ||||| ||||| Sbjct 1701 ACGGGTTGGCGTACG 1715 >seq72596 Length=790 Score = 89.7 bits (98), Expect = 6e-13 Identities = 176/257 (68%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 41362 ACACCAAGATTATTACGTCCATCAAGAATTTCATTACCAGTCGAATCTTTCCATACGCTC 41421 ||||||| |||| | ||||| | ||||||| ||| | |||||||||| || Sbjct 774 ACACCAATATTAAATCTACCATCGAATTTTTCATTTCCATTTTCATCTTTCCATGAACT- 716 Query 41422 AAGAAACTACGGCAACCCATTGGAGAAACCGGAACTGA---AGAACCAGTAATAGCTTTA 41478 |||||| ||| |||||||||||| ||| |||| ||| |||| || | |||| Sbjct 715 AAGAAAGAACGACAACCCATTGGACTAACTGGAATTGATTCAGAATGCGTCA---CTTTT 659 Query 41479 TTATTC---TTAACCGAAATAATGTCAGGATACATTCTTTTGCTTGCGCACTCTAGAGCA 41535 |||||| | ||||| || | || ||||| |||||||| ||| | | || Sbjct 658 TTATTCAAGTCTACCGATATGAAATCTGGATATATTCTTTTAGATGCAGTTTTAATTGCT 599 Query 41536 AGCTGTTTAATATCATAGTTCGGATCGTTTTTATAAAGATTAACACCTTCTTCAACAAAC 41595 | | ||| | |||||| || ||||| |||| | |||||| ||||| |||| || ||| Sbjct 598 TGTTCTTTTAAATCATAATTAGGATCATTTTCTTTAAGATTTACACCATCTTTAAGAAAG 539 Query 41596 ATAACAAGCTTAGGAAA 41612 | | || |||||||| Sbjct 538 AATATAACTTTAGGAAA 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545503661424000