Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8712 158 2e-33 seq95708 86.0 9e-12 >seq8712 Length=1748 Score = 158 bits (174), Expect = 2e-33 Identities = 462/707 (65%), Gaps = 10/707 (1%) Strand=Plus/Plus Query 77946 TCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACT 78005 ||| |||| ||||||||||| || |||||||| | | |||||| || | | | ||| Sbjct 110 TCAGCCAAGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTTTCAACA 169 Query 78006 CGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCT 78065 || ||||| || | ||| || ||||||||||||| || || || |||| | | ||| Sbjct 170 CGCTTCATGAACAAATCGGGAATCCATAGAGCAAGGAAGAGGTCACGGGCACGAACTTCC 229 Query 78066 TCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCT 78125 || || || |||||| || ||||| ||||| | | || | ||||| || || Sbjct 230 TCCTTGCCGTGGTTCTTTCGCAGGTCGAGGAACTCAAACACGTCTGCGTGCCACGGCTCC 289 Query 78126 AGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTG 78185 || || || | || | | |||||||| || || || ||||| || | |||||||||||| Sbjct 290 AGGTAAATGGGCAAAGCACCAGGTCGCTTGTTGCCACCCTGGTCGACGTATCTGGCGGTG 349 Query 78186 TTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATA 78245 || || | || | | ||| |||| | ||||| || || || || || || | ||| Sbjct 350 TTGTTGAACACGCGAAGCATGGGAACGACGCCGTTTGAGGTGCCGTTGGTGCCGGCAATG 409 Query 78246 TAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGAT 78305 || ||| | || ||||| | | | || || || || |||||||| || Sbjct 410 TACGAGCCAGTGGCACGAATGCGGTGGACGTTCAGGCCGATGCCGCCAGCCATCTTGGAG 469 Query 78306 ATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTA 78365 || | |||| |||| | | || || ||||| || || || ||||||||| ||| || Sbjct 470 ATCATGGCGC-ACGTCTGAGGGTGTCATAGATGCCTTCGATGCTGTCATCCTTCA-GTCG 527 Query 78366 AGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGAT 78425 | ||| || ||| |||| || || || || || || |||| ||| || || Sbjct 528 ACAAGGAAGCAGGATGACAGCTGGCATTGTGGCGTACCAGCGTTGAATAGTGTGGGCGAG 587 Query 78426 GCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTA---TG 78482 || || || || |||| || | || ||||| ||||| | | || | || Sbjct 588 GCGTGGGTGAAGAATTTGCTCGACATGAGGTTGTAGGTTTCCAGGACACGCTCCAGGTTG 647 Query 78483 TC-CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGT 78541 || || | || || || || |||||||| | ||| ||||| |||| || || | Sbjct 648 TCTCCCCAG----ATACCGACGGCAACACGCATAATCATGTGCTGTGGTCGCTCGACAAT 703 Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 ||| || | || | | || ||| |||| ||| || || ||||| || | ||| Sbjct 704 CTTGCCGTTGAGCTTGAGGAGATAGGATCGCTCCAGAGTCTTGAAGCCAAAGTACTGGTA 763 Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGT 78648 |||||||| ||||| | ||| |||| | |||| || |||| Sbjct 764 GTTGAAGTCTCTGTCGTAGACAATGGCAGAGTCGAGTTCCTCCTTGT 810 >seq95708 Length=954 Score = 86.0 bits (94), Expect = 9e-12 Identities = 196/293 (67%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 ||||| | || ||||| || || || || | || ||||| || ||||| || Sbjct 56 TCTTTGATATAGGTATCAATCAAGAGGGAGTAAGTCTCCGAGTGGATGTTTTCCATCATG 115 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 ||||| ||||||||||| || | ||||||| | || ||||| | || || ||| Sbjct 116 ATCTGGAATCCGTAAAAGCAACGAGCTTCTGGCACTTGGACCTCTCCGCTGAAACGCTCA 175 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 |||| ||||| || || || || ||| ||||| || ||||| | | || || Sbjct 176 ACCAAGTTCTCGTTGACAATGCCGTCAGAGGCAGCGAAGAATGCGAGGATGTGGGAGATG 235 Query 48582 AAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCT 48638 || ||||| |||| | ||| | || ||||| || | | |||||| || | ||| Sbjct 236 AAGTATTTCTCGTCGTCGTTCAGACGGTTGTTCCAATCGTGCAGATCTTTGGAGAGATCA 295 Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | ||||| || ||||| || || ||||| || || || ||||| | ||| || Sbjct 296 ATCTCTTCGGC-GTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAAAT 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693537358192000