Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8712 161 1e-34 seq95708 91.5 2e-13 >seq8712 Length=1748 Score = 161 bits (178), Expect = 1e-34 Identities = 462/706 (65%), Gaps = 12/706 (2%) Strand=Plus/Plus Query 76541 TCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACC 76600 ||| |||| ||||| ||||| || || ||||| | | ||| || || | | | ||| Sbjct 110 TCAGCCAAGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTTTCAACA 169 Query 76601 CGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCT 76660 || ||||| || | ||| || ||||||||||||| || || || |||| | | ||| Sbjct 170 CGCTTCATGAACAAATCGGGAATCCATAGAGCAAGGAAGAGGTCACGGGCACGAACTTCC 229 Query 76661 TCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCT 76720 || || || |||||| || || |||||||| | | || | ||||| || || Sbjct 230 TCCTTGCCGTGGTTCTTTCGCAGGTCGAGGAACTCAAACACGTCTGCGTGCCACGGCTCC 289 Query 76721 AGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTG 76780 || || || | || | |||| ||||| || || || ||||| || | |||||||| ||| Sbjct 290 AGGTAAATGGGCAAAGCACCAGGTCGCTTGTTGCCACCCTGGTCGACGTATCTGGCGGTG 349 Query 76781 TTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATA 76840 || || | || | | ||| |||| | |||||| || || || || || || | ||| Sbjct 350 TTGTTGAACACGCGAAGCATGGGAACGACGCCGTTTGAGGTGCCGTTGGTGCCGGCAATG 409 Query 76841 TAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAG 76900 || ||| |||||||| | ||||| || || || ||||| || ||| Sbjct 410 TACGAGCCAGTGGCACGAATGCGGTGGACGTTCAGGCCGATGCCGCCAGCCATCTTGGAG 469 Query 76901 ATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTA 76960 || | || || ||| | | |||||||||||||| || || || |||||| ||| || Sbjct 470 ATCATGGCGCA-CGTCTGAGGGTGTCATAGATGCCTTCGATGCTGTCATCCTTCA-GTCG 527 Query 76961 AGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGAT 77020 | ||| || ||| |||| || || || || || || || | ||| || || Sbjct 528 ACAAGGAAGCAGGATGACAGCTGGCATTGTGGCGTACCAGCGTTGAATAGTGTGGGCGAG 587 Query 77021 GCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAAC-TGCTTC----TA 77075 || || ||||| |||| || | || ||||| ||||| | || ||| | | Sbjct 588 GCGTGGGTGAAGAATTTGCTCGACATGAGGTTGTAGGTTTCCAGGACACGCTCCAGGTTG 647 Query 77076 TATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAG 77135 | |||| || || || || |||||||| | ||| ||||| ||||| || ||| Sbjct 648 TCTCCC-----CAGATACCGACGGCAACACGCATAATCATGTGCTGTGGTCGCTCGACAA 702 Query 77136 TCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 77195 |||| || | || | | || ||| |||| ||| || || ||||| || | || Sbjct 703 TCTTGCCGTTGAGCTTGAGGAGATAGGATCGCTCCAGAGTCTTGAAGCCAAAGTACTGGT 762 Query 77196 ATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTT 77241 | |||||||| ||||| | ||| | || | |||| ||||| Sbjct 763 AGTTGAAGTCTCTGTCGTAGACAATGGCAGAGTCGAGTTCCTCCTT 808 >seq95708 Length=954 Score = 91.5 bits (100), Expect = 2e-13 Identities = 197/293 (67%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||| | ||| ||||| || || || || | || || || |||||||| || Sbjct 56 TCTTTGATATAGGTATCAATCAAGAGGGAGTAAGTCTCCGAGTGGATGTTTTCCATCATG 115 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 ||||| ||||||||||| || | ||||| | | || |||||| | || || ||| Sbjct 116 ATCTGGAATCCGTAAAAGCAACGAGCTTCTGGCACTTGGACCTCTCCGCTGAAACGCTCA 175 Query 47011 GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATA 47070 ||| ||||| || || || || ||| ||||| || ||||| | | || || Sbjct 176 ACCAAGTTCTCGTTGACAATGCCGTCAGAGGCAGCGAAGAATGCGAGGATGTGGGAGATG 235 Query 47071 AAATATTTTTCATCGGTAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCT 47127 || ||||| || ||| ||| | || ||||| || | | |||||| || | ||| Sbjct 236 AAGTATTTCTCGTCGTCGTTCAGACGGTTGTTCCAATCGTGCAGATCTTTGGAGAGATCA 295 Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 | ||||| || |||||||| || ||||| || || || ||||| | ||| || Sbjct 296 ATCTCTTCGGC-GTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAAAT 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711773208096000