Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031042.1 Length=111325 Score E Sequences producing significant alignments: (Bits) Value seq33499 554 3e-153 seq107223 89.7 4e-13 >seq33499 Length=26748 Score = 554 bits (614), Expect = 3e-153 Identities = 628/842 (75%), Gaps = 0/842 (0%) Strand=Plus/Minus Query 5363 TTATTTATTACGCATATCCATAATCATTTGACCGTCGTAGCCAGTGCCAACCACAGTCTG 5422 |||||| ||||| ||||||||||| | ||| |||||| || |||| || || || Sbjct 24100 TTATTTGTTACGAGCATCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTG 24041 Query 5423 CGGTACACCACCTTGATATTTCTGAGCACGAATCATTTCAACTTCCAATTGCTTCCAACG 5482 |||||||||||||| ||||||| |||||| ||||||||||||| | ||| |||||||| Sbjct 24040 TGGTACACCACCTTGGTATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACG 23981 Query 5483 AATCATCTCAGGAGTAATGGTACGTTGCAATGCGGCGTTAGCTTCAGCTTCTTTCTTAGC 5542 ||||||||| ||||| || || ||||| | |||||||||||||||||| | ||| Sbjct 23980 AATCATCTCTGGAGTGATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGC 23921 Query 5543 TGCGTACAGTTTAGCATCTGCGTCACGTTCATTAGCAATAGCTTGGTTGTTGCGAGCTTC 5602 || || | |||||||||||| || ||||| || || |||| || || || ||||| Sbjct 23920 AGCATATAATTTAGCATCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTC 23861 Query 5603 ACGGTCTGCTTCTGCCTGTTTAACTTTTTGCTGTGCTTCCTGCTCAACACGAGCTAATTC 5662 || || || ||||||| |||||| |||||||| ||| | | || || | | || Sbjct 23860 TCGATCAGCCTCTGCCTTCTTAACTGCTTGCTGTGTTTCTTTAGCTACTCGGTCCAGATC 23801 Query 5663 AGCTTTAGCAGCATTAACCTGTTCTTCACGAACTTTGGTATTCTGTACCTGTTCCATGAT 5722 ||| | || || ||||||||||||||||||| || ||||| |||||| | |||||| Sbjct 23800 AGCCTGTGCTGCGTTAACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCATGAT 23741 Query 5723 TACCGGTGGCAAAGTAATATCCTGAAGGAACACCTGCTTAACTGTGTAACCATATGGGCG 5782 ||| ||||| || ||||| || | ||| | | || || || |||||||| || || Sbjct 23740 TACATCAGGCAAGGTGATATCTTGCAAGAAGATTTCTTTTACAGTATAACCATAAGGACG 23681 Query 5783 TGCGTACTCTTCAACTTCCTGTTGAATTGCAGTTTGCAATTGAGCCTGAATTTTAGCATC 5842 |||||| |||||| ||| || | || | ||||| || |||||||| | ||| | Sbjct 23680 TGCGTAGGCTTCAATTTCAGCTTTTACTGAATCCTGCAACTGCGCCTGAATCTCAGCGTT 23621 Query 5843 AAACAAATCTTGTGCTTTAGGTACAGACTTACCAAACTCACGAATAGTAGACAGTAATTT 5902 |||||||| |||||||| || || || ||||||||||| || | ||| || | | || Sbjct 23620 GAACAAATCCTGTGCTTTCGGGACTGATTTACCAAACTCTCGGACAGTGGATAAAAGCTT 23561 Query 5903 TTCAGTTACATATTTGTCTAACGCTTGATCCTGAGTACCTGCATTAATATGGTTAATCGG 5962 || |||||||| || | ||||| || ||||| ||||||||||| |||| || || Sbjct 23560 TTGCTCAACATATTTATCCAGAGCTTGCTCTTGAGTGCCTGCATTAATTCGGTTCATAGG 23501 Query 5963 TGCCTTAGAACCATCAAACTGCAACATAACAGTCAGGTCAACAGTGGATTTAAACTTATC 6022 |||||||||||||||||||||||||||||| |||| || || || |||||||||||||| Sbjct 23500 TGCCTTAGAACCATCAAACTGCAACATAACGGTCATATCCACTGTTGATTTAAACTTATC 23441 Query 6023 CTGACTAGGAACCTGAAGTTTATCTAATTTTAGAGCAATATCTTTTGTACTAAAAGTATC 6082 |||||| || || || | |||||| || ||| |||||||||||||| ||||| || Sbjct 23440 CTGACTCGGTACTTGCAATTTATCATATGTTATTTTGATATCTTTTGTACTGAAAGTCTC 23381 Query 6083 GAAAGAAGCAAAAGGATTTACAATATGAAAGCCGGGTAATACTGGATTAGGGTCTACTTT 6142 || ||||| || || || | ||| || || || ||| |||||||| | ||||| Sbjct 23380 AAAGCTTGCAAATGGGTTAACCACATGGAACCCTGGCTTTACAGGATTAGGATTAACTTT 23321 Query 6143 ACCCAGGAAAGTCTGGGTTTTAACAGTACCGTCTTGAACAACAGTATAGGAGTTAAGGGC 6202 ||||| || || || ||||| || ||||| ||||| || | ||||||| || || || Sbjct 23320 ACCCATAAAGGTTTGTGTTTTTACTGTACCATCTTGCACGATGATATAGGAATTTAGAGC 23261 Query 6203 CA 6204 || Sbjct 23260 CA 23259 >seq107223 Length=315 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 110489 ATTACATCGC-CTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGT 110547 |||||||||| ||| | || ||||| | || || || ||||| |||||||||||| Sbjct 254 ATTACATCGCGCTGTGGAAC-GTACGGTTGATCACATCAAGTTGTTGCTCACGAGTCAGT 196 Query 110548 GCGTTAAATCGAACAGCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTTTTCAGGG 110607 |||| |||||| || || || ||||| || || ||||| || || ||||| ||| Sbjct 195 TTAATAAAGTTAACAGCATAACCGGATACACGAATGGTCAATTGTGGATAGTTTTCTGGG 136 Query 110608 TGTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTG 110663 || | | ||||||| ||| || |||||| ||||| || ||||| || || || Sbjct 135 TGCTCCATCGCATCCATAAGTTGTTCACGATCAAACACGTTCACATTCAGATGATG 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355549677933800