Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq35690 232 1e-55 seq28361 168 1e-36 seq60516 147 3e-30 seq2347 125 1e-23 >seq35690 Length=1912 Score = 232 bits (256), Expect = 1e-55 Identities = 417/605 (69%), Gaps = 6/605 (1%) Strand=Plus/Plus Query 88096 CCTATTGAGGCCCGCAATGAAAACCAGCAGCAATACATGAATGCGCTGGAAACCAAACAA 88155 || ||||| ||||| |||||| ||| ||| || | || || | ||||| ||||| Sbjct 1245 CCGATTGAAGCCCGAAATGAAGCTCAGGCGCATTATCTTAACGCCATAGAAACAAAACAG 1304 Query 88156 CTGATATTCGCCACCGGTGAAGCAGGGTGCGGTAAAACATTCCTTTGCGCCGCCTACGCT 88215 || || |||||||| || ||||| || ||||| ||||| | || | || || | || Sbjct 1305 CTTATCTTCGCCACGGGCGAAGCGGGCTGCGGCAAAACCTGGATTAGTGCTGCGAAAGCA 1364 Query 88216 GCCGAACGTCTACTGGCAAAAGACTTTGACCGTATCATTGTCACCCGTCCAGTCCTCTCT 88275 || || || | || || | ||| | || || || || || || || || Sbjct 1365 GCAGAGGCCCTGATTCATAAGGATATCGACAGGATTATCGTTACGCGCCCGGTGCTACAG 1424 Query 88276 GCAGATGAAGACCTTGGCTTCTTGCCCGGCGACGTCTCAGAGAAGTTCGCCCCTTACTTC 88335 || ||||| || || || ||| | ||||| || |||||||||| |||||||| || ||| Sbjct 1425 GCGGATGAGGATCTGGGATTCCTTCCCGGTGATATCTCAGAGAAATTCGCCCCCTATTTC 1484 Query 88336 CGTCCTGTCTACGACGTGCTAAGCAAACGCTTAGGTGGTCAATTCTTACGC--TACTGTT 88393 || || || |||||| | || ||||| | || | || ||| || || ||| Sbjct 1485 CGCCCGGTTTACGACATTCTGGTTAAACGTCTTGGCG--CATCCTTTATGCAATATTGTC 1542 Query 88394 TAAAGCCGGGAATTGACAAGGTAGAGATTGCTCCCTTCGCCTACATGCGCGGACGTAGCT 88453 | |||| ||| | ||| || || ||||| || || ||||| |||||||| || | || Sbjct 1543 TGCGTCCGGAAATCGGCAAAGTGGAAATTGCGCCTTTTGCCTATATGCGCGGCCGCACCT 1602 Query 88454 TTGAAAATGCAGTCATTTTATTAGATGAAGCTCAGAACACTACTGCTCAGCAGATGAAGC 88513 |||||||||| || | | | || ||||| |||||| || ||| ||||||||| Sbjct 1603 TTGAAAATGCGGTAGTGATTCTGGACGAAGCGCAGAACGTGACGGCTGCGCAGATGAAAA 1662 Query 88514 TCTTCCTGACACGTATCGGGGAGAACTGTCTC-GTGATTGTCAATGGCGATATTACTCAG 88572 | |||||||| || | || || || |||| | |||||||| || ||||||||||| ||| Sbjct 1663 TGTTCCTGACCCGCCTTGGCGA-AAATGTCACGGTGATTGTTAACGGCGATATTACCCAG 1721 Query 88573 TGCGACTTACCGAAAGGGGTACGTTCTGGGCTGGCCGATGCGCTAACGCGTTTTGACACT 88632 ||||| || || ||||| | ||| || || || || ||||| ||||||| || Sbjct 1722 TGCGATTTGCCCGCTGGGGTGCCTTCCGGTCTCGCAGACGCGCTGGCGCGTTTCGAAGAG 1781 Query 88633 GACGACTTAGTTAGCGTTATTCACTTTGTGAAAGACGACTGTGTACGCTCCGAGCTTTGT 88692 ||||| | ||| || || | | || | ||||| || ||||| || |||| ||| ||| Sbjct 1782 GACGAGATGGTTGGCATTGTCCGTTTCGGCAAAGAGGATTGTGTGCGTTCCGCGCTGTGT 1841 Query 88693 CAACG 88697 || || Sbjct 1842 CAGCG 1846 >seq28361 Length=3781 Score = 168 bits (186), Expect = 1e-36 Identities = 215/296 (73%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 99468 ATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAAGGCGTTGTTAAAGGCGAC 99527 |||||||| ||| |||| |||||| | | || | || |||||| ||| ||| Sbjct 2732 ATGAAACAGTATCTGGACTTAATGCGCTACGTGCTGAACGAAGGCACACCAAAATCTGAC 2673 Query 99528 CGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTGAA 99587 ||||| || || || ||| | || | ||||| || || |||||||||||| || || Sbjct 2672 CGTACCGGTACAGGCACGCTTTCAATTTTTGGTCACCAGATGCGTTTTAATCTGCAGGAT 2613 Query 99588 GGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCCTT 99647 || ||||| |||||||| ||||| || || | || || || |||||||| || || Sbjct 2612 GGCTTTCCCCTGGTCACGACTAAAAAGTGCCATGTTCGCTCCATCATTCATGAGCTGCTG 2553 Query 99648 TGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCTGG 99707 ||||| ||| ||||||| ||||| | ||||||||||| ||| ||| |||||||| Sbjct 2552 TGGTTTCTGCAAGGGGACACCAACATTGGTTACCTGAAAGAAAACAATGTCTCTATCTGG 2493 Query 99708 AATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCG 99763 ||||||||| | | ||| | || | | |||||||||||||| || |||||||| Sbjct 2492 GATGAGTGGGCAGATGAGCAGGGCAATCTGGGACCGGTATACGGCAAACAGTGGCG 2437 Score = 134 bits (148), Expect = 2e-26 Identities = 226/325 (70%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 100167 CTGTCCTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATC 100226 || |||||||| || ||||| ||| | ||| | ||| | || ||||||| || ||| Sbjct 2258 CTCTCCTGTCAGCTTTACCAGCGTTCCTGCGACATTTTCCTGGGGCTGCCGTTTAACATC 2199 Query 100227 GCGTCGTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGAC 100286 || || || |||||||| || ||| | || ||||| | | ||| || || ||| Sbjct 2198 GCCAGCTATGCGCTGCTGGTGCATATGGTCGCGCAACAGTGCGATCTGGAGGTCGGTGAC 2139 Query 100287 TTCGTCTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAGACACGTACT 100346 || |||||||| || || || || || || |||||| ||||| ||| | || Sbjct 2138 TTTGTCTGGACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCCTG 2079 Query 100347 CAGCTAGGACGCACT--CCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACT 100404 || || ||||| | ||||| | ||||| || |||| || || || ||||||| || Sbjct 2078 CAACT--GACGCGCGAACCGCGTGCGTTACCGAAGCTGGTGATTAAACGCAAGCCTGCCT 2021 Query 100405 CTATCTTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCCGCCA 100464 | | || |||||| || || || || |||||||| | ||||| || | ||||||| Sbjct 2020 CGCTGTTTGACTATCGTTTCGACGATTTTGAGATTGAAGGTTACGATCCGCATCCCGCCA 1961 Query 100465 TTAAAGCGCCGGTGGCGATATGAAC 100489 | ||||||||||| ||| | ||||| Sbjct 1960 TCAAAGCGCCGGTTGCGGTCTGAAC 1936 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 99894 ATTGACCAAATCTCCAAGGTCATTGACCAGTTGAAAAACGACCCAGATAACCGACGCATT 99953 ||||| || ||| |||| || ||||| ||| | || ||| || ||| ||| ||||| Sbjct 2408 ATTGATCAGATCACCAAAGTGATTGAACAGATCAAGCGCGATCCGGATTCCCGCCGCATC 2349 Query 99954 ATTGTCAGTGCATGGAACGTTGCCGACCTCGACGATATGGCCTTAGCGCCATGCCATGCG 100013 |||||| || |||||||| | ||| || || || ||||| | || || |||||||| Sbjct 2348 ATTGTCTCGGCGTGGAACGTGGGCGAACTGGATGAAATGGCGCTGGCTCCGTGCCATGCC 2289 Query 100014 TTCTTCCAGTTCTAC 100028 || |||||||||||| Sbjct 2288 TTTTTCCAGTTCTAC 2274 >seq60516 Length=573 Score = 147 bits (162), Expect = 3e-30 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 99525 GACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCT 99584 |||||||| ||||| || || | |||| || | || ||||| || || |||| Sbjct 89 GACCGTACCGGCACCGGCACCTACAGCGTGTTCGGTTACCAGATGCGCTTCAACCTGGCC 148 Query 99585 GAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTC 99644 || || || || | ||||| || ||| || ||||| || || || |||||||| Sbjct 149 GATGGCTTCCCCATCGTCACCACCAAGAAGTGCCACCTGAAGTCCATCATCCATGAACTA 208 Query 99645 CTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATC 99704 || ||||||||| | || |||||||||| | |||||||||| || |||||||||| ||| Sbjct 209 CTGTGGTTCCTGCAGGGTGATACCAATATCAAGTACCTGAAGGACAACGGCGTCAGCATC 268 Query 99705 TGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCG 99763 ||| | ||||||| |||||||||| || | || ||||||||||| | |||||||| Sbjct 269 TGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTATACGGCTACCAGTGGCG 327 >seq2347 Length=4848 Score = 125 bits (138), Expect = 1e-23 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 99580 TGGCTGAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATG 99639 |||| || || ||||| |||||||| || ||| || || || | || || || || | Sbjct 2011 TGGCCGAGGGCTTTCCCCTGGTCACCACCAAGAAATGCCATCTGAGATCCATCATCCACG 1952 Query 99640 AACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCA 99699 |||| || ||||||||| | || || ||||||| || |||||||| || || ||||| Sbjct 1951 AACTGCTGTGGTTCCTGCAGGGCGAGACCAATATCCGCTACCTGAAGGACAATGGCGTGT 1892 Query 99700 CTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGT 99759 | |||||| | || |||| ||||||||||||| | |||||||| ||||| | |||| Sbjct 1891 CCATCTGGGACGAATGGGCCGACGAGAACGGTGAGCTGGGACCGGTCTACGGCTACCAGT 1832 Query 99760 GGCG 99763 |||| Sbjct 1831 GGCG 1828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 733079249268000