Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031047.1 Length=170770 Score E Sequences producing significant alignments: (Bits) Value seq33108 154 2e-32 seq31280 113 5e-20 seq62284 93.3 5e-14 seq34305 82.4 8e-11 >seq33108 Length=3479 Score = 154 bits (170), Expect = 2e-32 Identities = 126/153 (82%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 62569 CTGCGTCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCGCAGCTGACC 62628 ||||| |||||||| |||||||| || || || ||||| || || ||||||||||||||| Sbjct 2816 CTGCGCCGTGAAACGCTGGAAGACGCCGTGAAACATCCTGAGAAGTATCCGCAGCTGACC 2875 Query 62629 ATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACAGCAGCGCGAC 62688 || ||||| ||||| ||||| || |||||||| || ||||| || ||||| ||||| ||| Sbjct 2876 ATTCGTGTTTCCGGGTATGCCGTGCGCTTTAATTCGCTGACGCCTGAACAACAGCGTGAC 2935 Query 62689 GTTATCGCTCGTACCTTCACCGAGAGTTTGTAA 62721 || || || |||||||| || || ||||| ||| Sbjct 2936 GTCATTGCCCGTACCTTTACGGAAAGTTTATAA 2968 >seq31280 Length=10079 Score = 113 bits (124), Expect = 5e-20 Identities = 267/401 (67%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 152001 TGCCAACTCCTATTATGGCTGGTTGTCGTACTCCTACTCGACAGTTCAGTTCATGCGTTG 152060 |||| || || || ||| | || ||||| || || || |||||||| || || || Sbjct 1741 TGCCGACGCCAATCATGTCGGGAGTGCGTACGCCAACCCGTCAGTTCAGCTCCTGTGTCC 1682 Query 152061 TTATTGAGGCAGGAGATTCGCTGAAGTCTATCAATAAGGCTTCTGCTTCAATTGTTGAAT 152120 | ||||| || || ||| | || ||||| | | || | ||||| ||| Sbjct 1681 TGATTGAATGTGGCGACAGCCTGGATTCCATCAACGCGACCTCCAGCGCTATTGTGAAAT 1622 Query 152121 ATATCTCCAAACGAGCTGGAATCGGCATTAACGTTGGTATGATTCGTGCCGAAGGTTCTA 152180 | | || |||| || || || || ||||||| ||| || || || || Sbjct 1621 ACGTTTCACAACGCGCAGGTATTGGTATTAACGCGGGTCGTATCCGCGCGCTGGGCAGCC 1562 Query 152181 AGATTGGCATGGGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGA 152240 |||| || ||||||| |||||| ||| ||| || || | || || || |||| Sbjct 1561 CGATTCGCGGCGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAGCACTTCCAGA 1502 Query 152241 CTGCTGTTAAATCATGCTCACAGGGTGGAATTCGTGGCGGCGCTGCTACTGCT-TATTAT 152299 | || || ||||| || || ||||| || | ||||||||||| || || ||| | ||| Sbjct 1501 CAGCGGTGAAATCCTGTTCGCAGGGCGGCGTCCGTGGCGGCGCAGCGAC-GCTGTTCTAT 1443 Query 152300 CCTATTTGGCATTTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGGCGTAGAA 152359 || || |||||| ||||||| |||| || | || ||||||| ||| || || ||| Sbjct 1442 CCGATGTGGCATCTGGAAGTAGAAAGCCTGTTAGTCCTGAAAAACAACCGTGGTGTGGAA 1383 Query 152360 GAAAACCGCATCCGTCATATGGATTATAGTGTTCAGCTGAA 152400 | |||||| | ||||| ||||| || |||| ||||| || Sbjct 1382 GGTAACCGCGTACGTCACATGGACTACGGTGTGCAGCTCAA 1342 >seq62284 Length=976 Score = 93.3 bits (102), Expect = 5e-14 Identities = 236/354 (67%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 152000 TTGCCAACTCCTATTATGGCTGGTTGTCGTACTCCTACTCGACAGTTCAGTTCATGCGTT 152059 || ||||| |||||||||||||||| ||||| |||||| || |||||||| || ||| Sbjct 486 TTACCAACACCTATTATGGCTGGTTTACGTACAAATACTCGTCAATTCAGTTCTTGTGTT 427 Query 152060 GTTATTGAGGCAGGAGATTCGCTGAAGTCTATCAATAAGGCTTCTGCTTCAATTGTTGAA 152119 || || | | |||||| || | ||| | | | | | || |||| | || Sbjct 426 GTAATGAATGTAGGAGACAGCCTAGACAGTATTAGTGCTGGTAATTCTGCAATCATGAAA 367 Query 152120 TATATCTCCAAACGAGCTGGAATCGGCATTAACGTTGGTATGATTCGTGCCGAAGGTTCT 152179 ||||| || || ||||||| | || | || |||| ||||||| | |||||| Sbjct 366 TATATTTCTAAGAAAGCTGGACTAGGTGTAAATTATGGTCGCGTTCGTGCAGTAGGTTCA 307 Query 152180 AAGATTGGCATGGGTGAAGTACGCCATACTGGTGTTATTCC-TTTTTGGAAACATTTTCA 152238 | ||| | ||||| | | ||| || || | ||||| ||| || || | || Sbjct 306 GAAATTCGTGGTGGTGATGCAGTCCACACAGGCTTGATTCCATTTCTGTCGGCAGTGGCA 247 Query 152239 GACTGCTGTTAAATCATGCTCACAGGGTGGAATTCGTGGCGGCGCTGCTACTGCTTATTA 152298 | ||||| |||| || || |||||||| |||| || || || || |||| | | Sbjct 246 -AAAACTGTT-AATCCTGTTCTCAGGGTGGTGTTCGAGGTGGAGCAGCAACTGTACACTT 189 Query 152299 TCCTATTTGGCATTTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGG 152352 ||| | ||||||| || ||||| ||||| | || || ||||||| ||||| Sbjct 188 TCCACTATGGCATTACGAGTTTGAAGATCTTGTAGTACTG-AAAATAATAAAGG 136 >seq34305 Length=2218 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 62605 CCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCT 62664 || || |||||||| ||| | |||||||| || || || ||||| |||||||||||||| Sbjct 702 CCTGAGAAATATCCTCAGTTAACCATCCGCGTTTCGGGCTATGCCGTTCGCTTTAACTCG 643 Query 62665 CTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAG 62712 || || || ||||||| ||||| || | |||||||| ||| || Sbjct 642 CTCACCAAAGAGCAGCAGCAGGACGTGATTACCCGTACCTTTACCCAG 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545446155240000