Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq69190 443 5e-120 seq105218 251 2e-62 seq29027 120 8e-23 seq43828 113 1e-20 seq45636 102 2e-17 seq83571 96.9 9e-16 >seq69190 Length=479 Score = 443 bits (490), Expect = 5e-120 Identities = 390/483 (81%), Gaps = 30/483 (6%) Strand=Plus/Plus Query 4978 GGACCGATCAAGTAGGCGTCATTGAATCCGTCACCATCGACGCAGACCGCCGGGGGCGGG 5037 |||| || || || ||||||||||||||||| |||||||||||||| |||||||| || Sbjct 1 GGACTGACCAGGTTGGCGTCATTGAATCCGTGACCATCGACGCAGATCGCCGGGGC--GG 58 Query 5038 CTGTTGTGCGTTTTGGTCGAAGCGCGCGAGCCGATGAGATTTTCAACGACATCGTTGACG 5097 |||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 59 CTGTGGTGCGCTTTGGAAGAAGCGCGCGTGCCGATGAGATTTTCAACGACATCGTTGACG 118 Query 5098 GCATTCGTAAACACGTTTCCGTTGGCTACCGCGTGTTAGCGGCGAAGCTGACAGAGACGC 5157 | ||||| || |||||||| ||||| ||||||||||||||||| || ||||| || |||| Sbjct 119 GAATTCGGAAGCACGTTTCTGTTGGTTACCGCGTGTTAGCGGCCAAACTGACTGAAACGC 178 Query 5158 GCGACGAATGGCAGGACGTTTACCGGATCACTGATTGGGAACCTTACGAAATTTCTATTG 5217 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || | Sbjct 179 GCGACGAATGGCAGGACGTTTACCGGATTACTGATTGGGAACCTTACGAAATTTCCATCG 238 Query 5218 TGAGTGTTCCCGCTGACAACAGCGTTGGCATTGGCCGTGCTCTTGACACCCCGCACGAAG 5277 |||| ||||| ||||||| ||||||||||||||| ||| |||||||| ||| || |||| Sbjct 239 TGAGCGTTCCGGCTGACAGCAGCGTTGGCATTGGGCGTCATCTTGACAACCCCCAAGAAG 298 Query 5278 AACAGCGGGCGGAG--AAGCCCAATACT--TCGCAAAGTA-------------CAAAA-- 5318 |||| | |||||| || ||| ||||| | ||| | || ||||| Sbjct 299 AACAAC--GCGGAGCTAAACCCGATACTGCTGGCACATTAGACGTTCCGGCACCAAAAAT 356 Query 5319 -CCCGTTTCTGAGGATTCACGA---ATGGA---AAAGATTTTACGCGATGCGTCAGGCAA 5371 |||||||||||| ||| ||| | ||| |||| || ||||| ||||| || Sbjct 357 TATTGTTTCTGAGGATAATCGAAATATGAATATTAAGGTTTTGCGTGATGCATCAGGTAA 416 Query 5372 CCTGGTGCGCGCACTGGTAGACGAAAAAGGCAACATCACGCAGGTTCTGGAAGTGCTGGA 5431 |||||||||||| || ||||||| || |||||||| | ||||||||||||||||| Sbjct 417 CCTGGTGCGCGCCGAAGTTGACGAAAGCGGTAACATCACCAAAGTTCTGGAAGTGCTGGA 476 Query 5432 ACG 5434 ||| Sbjct 477 ACG 479 >seq105218 Length=700 Score = 251 bits (278), Expect = 2e-62 Identities = 497/724 (69%), Gaps = 46/724 (6%) Strand=Plus/Minus Query 9083 CGCCTTTCGGTGACCCAACACAGGCCGTTGTTGGGCCGTCTATCTTCCAGGATGATTTCA 9142 |||| ||||| ||| || ||||| ||| ||||| || || | ||||||||||| Sbjct 692 CGCCATTCGGAGACATGACGCAGGCGATTGCTGGGCTATCCATTTATCAGGATGATTTTG 633 Query 9143 GCGCGCCAGCTACCAGCCCGGATAAAGATGTGACCGTGTTCCCTGACGGCACAACGTTTG 9202 ||||||||| |||| | || || || | | |||| |||||||| || ||| Sbjct 632 ACGCGCCAGCAGACAGCGCAGACCGTGACACGATCCTTTTCC-TGACGGCAGTTCGATTG 574 Query 9203 AATATGACAGCGCATCGAACAC-GTATACGCAGACCATTGCCGGTTCTGGCAATTGGGTG 9261 | || |||||||| ||||||| ||| | | || | | | | |||||| || || Sbjct 573 ATTACAACAGCGCAACGAACACCGTACAACCTGAACGT--CATG----GGCAAT-GGCTG 521 Query 9262 TTCAACCTGAAAAACGCGCAGATCAACA-CGGAAACGGCCACCGTGACGGC---GGAAAC 9317 | ||| |||||| || ||||| ||||||| || || ||||| Sbjct 520 GTGAAC---------------ATCAACTGCGTAAACG-CCACCGTCACAGCCGTGGAAAG 477 Query 9318 CAGCGTGACGCTGGACACGCCTGACACGATTTGCACCGGCAACCTGACCGTGGCCAAAAG 9377 || || | ||||| ||||| || || ||| ||||||||||||||||| |||| Sbjct 476 ----GTCACCATTGACACACCTGAAACAATGGTCACTGGCAACCTGACCGTGGCGCAAAG 421 Query 9378 TCTGACTATGGGCCAGGAGGGCGGAACAGCGACCATGAAAGGTGCCGTGTCAATAGAAGG 9437 | | || ||||||||||| ||||| | || ||||||||||| ||| | || ||||| Sbjct 420 TTTCACGATGGGCCAGGAAGGCGGCAGCGCCACCATGAAAGGCAATGTGGCCATTGAAGG 361 Query 9438 ACCATCCCTGACACACAACGGCAAGAATATTGGTTCTG-AC-CATTCGCATAGCGGCGTT 9495 |||||| ||||||||||| || ||||| | | || || ||| ||||| ||| Sbjct 360 CGGTAGCCTGACGCACAACGGCAAAAACATTGG--CAGCACGCACCTGCACAGCGGTGTT 303 Query 9496 CAAACAGGCGGCGGGAACACCGGCGCACCGGTTTAATCTGACACCCCGCACGAA--GATA 9553 || | ||||| | | || ||||| || |||||||||| ||| || | | |||| Sbjct 302 CAGTCTGGCGGAGCAACGACGCAGGCACCTGTCTAATCTGACAACCCCCAAGCAAGGATA 243 Query 9554 -----GAAAACCTGTCGTGCGGGCATCATCGAGCATATGAACGGAACAGACGCGACCACC 9608 || ||| | |||||||||||| | | ||||| || || | ||| | || Sbjct 242 AGCCCGACCACCCGA--TGCGGGCATCATTGCCCGCATGAAAGGTACGAATGCGGCAACA 185 Query 9609 GGAAAACCGCTGGATGGGCTGGCCCATTTGCAGCAATCAATAAAAGACATTCTGACCACG 9668 || ||||||||||| | | |||| ||| || |||||| ||||| || || ||| Sbjct 184 GGCGCGCCGCTGGATGGCATCGACCATCTGCGCCAGTCAATACGCGACATACTCACTACG 125 Query 9669 CCGATTGGTTCGCGTGTGATGCGGCGCGACTATGGCAGCCGCCTGCCCCGCCTGATTGAC 9728 || | || |||| |||||||| ||||||||||||||||| |||||| |||| | ||| Sbjct 124 CCAACCGGCACGCGAGTGATGCGCCGCGACTATGGCAGCCGACTGCCCTCCCTGGTGGAC 65 Query 9729 GCACCAATGAACCGGGCCACGCTGATTGACCTGTACGCGGCCACAGCCGAAGCACTGGCC 9788 || ||||||||||| | |||||| | || | ||||| ||||| | ||||| |||| Sbjct 64 GCGCCAATGAACCGCGAAACGCTGCTGGATATTTACGCTGCCACCGTTGAAGCGCTGGAA 5 Query 9789 ACCT 9792 |||| Sbjct 4 ACCT 1 >seq29027 Length=2418 Score = 120 bits (132), Expect = 8e-23 Identities = 190/271 (70%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 26930 TCAGTGGTGTAGCGCTC---AACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACCG 26986 || |||||||| || || | |||| |||||| |||||||||||| ||||| | Sbjct 870 TCCGTGGTGTAACGTTCCTGACCGCC---CTGATCCTGCCATTTACGGGTGCGCAGCTGG 926 Query 26987 CCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTTG 27046 |||||||| |||||| ||||| ||||||||||| || || | ||||||||| ||| Sbjct 927 CCTTCAATATACACCTGAGAACCTTTACGCAGGTATTCCCCCGCCACTTCCGCCAGTTTG 986 Query 27047 CCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTCGCCTGTGGCCTTATCT 27106 || || | || || ||||||||||| || |||||| ||| || || ||| || Sbjct 987 CCAAACAGCACGACACGGTGCCATTCGGTGATCTCTTTGTTTTCACCGGTCTGCTTGTCG 1046 Query 27107 TTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACGGCATGTAG 27166 ||| | || | || || | | | ||||| || |||||||| |||||||| Sbjct 1047 CGCCAGCTCTCAGAGGTAGCCAGCGTAATGTTGGCGACAGCGCCACCATTTGGCATGTAA 1106 Query 27167 CGCACTTCTGGATCGTTGCCTAAATTACCGA 27197 || ||||| ||||| | || | ||| |||| Sbjct 1107 CGTACTTCCGGATCCTGACCCAGATTCCCGA 1137 >seq43828 Length=1516 Score = 113 bits (124), Expect = 1e-20 Identities = 179/254 (70%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 38567 TGGTCACAGGAAGCGTTTGGCGACGTTGGCCCTGTTGGACCACTGAAACACCTGTCAATA 38626 |||||| | || | || || | ||||| || |||||||| |||| |||||||| | | Sbjct 1284 TGGTCAGAAGAGACTTTCGGGGCTGTTGGTCCCGTTGGACCTTTGAAGCACCTGTCCAAA 1225 Query 38627 GAAGCGCTGGAAGCCGCAGCAGCGCCAGGCGACCTTTCTGAATGGGCTGACATGCAATTC 38686 ||||||||||||||||| | || | || || || || ||||| ||| | || || Sbjct 1224 GAAGCGCTGGAAGCCGCTGAGGCTGTTGATGATCTCTCAGAGTGGGCCGACCTCCAGTTT 1165 Query 38687 CTGCTGTGGGATGCGCAGCGCCGTGCTGGCATCACTGACGAGCAAATT-ACGCAGGCCAT 38745 | ||||| || |||||||||||||| ||||| || || | || |||| || || Sbjct 1164 TACTTTTGGGACGCACAGCGCCGTGCTGGTATCACCGATGAAGAGCTTAACGC-TGCAAT 1106 Query 38746 GATTGATAAGCTGGCAGTGAACAAAGCGCGCACCTGGCAGGAACCTAAAGACGGAGAACC 38805 | |||| || || |||||||| |||| |||| || || |||||||| ||| | Sbjct 1105 GGAGCTTAAGTTGAGCGTCAACAAAGCCCGCAAGTGGCCTGAGCCGAAAGACGGCGAAGC 1046 Query 38806 GCGCCTGCACATCC 38819 ||| ||| |||| Sbjct 1045 GCGTGAGCATATCC 1032 >seq45636 Length=1761 Score = 102 bits (112), Expect = 2e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 25271 GGTGGCGACCCCACCAGGAATCGAACCTGGAACCTACAGCTTAGAAGGCTGTCGCTCTAT 25330 |||||||||||| ||||| ||||||||| |||||| ||||||||||| || ||||||| Sbjct 35 GGTGGCGACCCCTGCAGGACTCGAACCTGCGACCTACTGCTTAGAAGGCAGTTGCTCTAT 94 Query 25331 CCGGTTGAGCTATGGGGCCGT 25351 || ||||||||| |||||||| Sbjct 95 CCAGTTGAGCTAAGGGGCCGT 115 >seq83571 Length=553 Score = 96.9 bits (106), Expect = 9e-16 Identities = 74/83 (89%), Gaps = 6/83 (7%) Strand=Plus/Minus Query 7443 TAATGCCAGCGCCGTCCTGGGAAAACCTGGACGACTTTTTT--GACCTTGACACAGACGG 7500 ||||||||||||||||||||||||||||||||||||||||| ||| ||| || ||| Sbjct 86 TAATGCCAGCGCCGTCCTGGGAAAACCTGGACGACTTTTTTACGAC--TGATACCAACG- 30 Query 7501 CGGGTTTGCA-TTCCCCGCCGTT 7522 |||||||||| |||||||||||| Sbjct 29 CGGGTTTGCAATTCCCCGCCGTT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133808635368000