Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq33499 462 3e-125 seq31280 260 2e-64 seq33108 174 2e-38 seq62284 123 3e-23 seq36028 100 3e-16 seq38626 96.9 4e-15 seq40411 95.1 1e-14 seq34305 89.7 6e-13 >seq33499 Length=26748 Score = 462 bits (512), Expect = 3e-125 Identities = 596/818 (73%), Gaps = 12/818 (1%) Strand=Plus/Minus Query 82434 TTACGAGAATCGAAAATCACTTTGCCAGCGTAATCCGAACCCATGACAGTCTGAGGTACA 82493 ||||||| ||| | ||||| || || |||| || ||| || || || || |||||| Sbjct 24093 TTACGAGCATCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTGTGGTACA 24034 Query 82494 CCACCTTTATAGCGGGTAGAGTAGTTCATCTGTACATCCAGTTCTTTCCAGCGGATCATT 82553 ||||||| || || ||||| | || || |||| |||||| || ||||| Sbjct 24033 CCACCTTGGTATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACGAATCATC 23974 Query 82554 TCTGGGGTAATTGTGCGTTGCAGTACGGCGTTAGCCTCTGCTTCTTTCTTCGCCGCGTAC 82613 ||||| || ||||| |||| || |||||| || |||||||| | || || || Sbjct 23973 TCTGGAGTGATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGCAGCATAT 23914 Query 82614 AGTTTAGCATCAGCATCACGTTCGTTGGCGATTGCTTCGTTTTCACGCGCCTGACGATTT 82673 | ||||||||| ||||| |||||||| || ||||| || | ||| || | |||| Sbjct 23913 AATTTAGCATCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTCTCGATCA 23854 Query 82674 GCTTCCGCTTGTTTTACTGCTTGCTGTGAAGTCTGTT-CGACTTTTGCCAGTTCCGCACG 82732 || || || | || ||||||||||||| ||| | | ||| |||| || || | Sbjct 23853 GCCTCTGCCTTCTTAACTGCTTGCTGTGTT-TCTTTAGCTACTCGGTCCAGATCAGCCTG 23795 Query 82733 AGCGGCGTTAACCTGTTCTTCGCGGATCTTCGTGTTCGTTACCTGTTCCATGATAACATC 82792 || ||||||||||||||||| || ||||| || || |||||||| | |||||| ||||| Sbjct 23794 TGCTGCGTTAACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCATGATTACATC 23735 Query 82793 AGGCAGGGTAATATCCTGCAAGAATACCTGTTTCACGGTGTAACCGTAAGGACGTGCATA 82852 ||||| ||| ||||| |||||||| | | ||| || || ||||| ||||||||||| || Sbjct 23734 AGGCAAGGTGATATCTTGCAAGAAGATTTCTTTTACAGTATAACCATAAGGACGTGCGTA 23675 Query 82853 CTCTTCAACTTC--CTGTT---GAATCGCGGTCTGCAACTGGTTCTGGATCTTAGCATCG 82907 |||||| ||| || || ||||| ||||||||| ||| |||| ||| | | Sbjct 23674 GGCTTCAATTTCAGCTTTTACTGAATC-----CTGCAACTGCGCCTGAATCTCAGCGTTG 23620 Query 82908 AACAGATCCTGTGCTTTCGGAACTGATTTACCGAACTCACGAACGGTAGACAGCAGTTTT 82967 |||| ||||||||||||||| ||||||||||| ||||| || || || || | || ||| Sbjct 23619 AACAAATCCTGTGCTTTCGGGACTGATTTACCAAACTCTCGGACAGTGGATAAAAGCTTT 23560 Query 82968 TCGGTTACATATTTATCCAGCGCTTGTTCCTGATCTCCCGCGTTAATACGGTTGATCGGC 83027 | |||||||||||||| ||||| || ||| || || ||||| ||||| || || Sbjct 23559 TGCTCAACATATTTATCCAGAGCTTGCTCTTGAGTGCCTGCATTAATTCGGTTCATAGGT 23500 Query 83028 GCTTTGTTACCGTCAAATTGCAGCATAACAGTCATATCCACGGTGGATTTAAACTTATCC 83087 || || ||| ||||| |||| |||||| ||||||||||| || ||||||||||||||| Sbjct 23499 GCCTTAGAACCATCAAACTGCAACATAACGGTCATATCCACTGTTGATTTAAACTTATCC 23440 Query 83088 TGTGAAGGAACCTGCAATTTATCGAATTTCTTCGCGATGTCTTTCGTGCTGAAAGTATCG 83147 || || || ||||||||||| || | | ||| ||||| || |||||||| || Sbjct 23439 TGACTCGGTACTTGCAATTTATCATATGTTATTTTGATATCTTTTGTACTGAAAGTCTCA 23380 Query 83148 AAATCAGCCAGCGGGTTTACGATATGGAAACCAGGCATTACAGGTTTCGGAGAAACCTTA 83207 || || | ||||| || | |||||| || ||| ||||||| || ||| ||| ||| Sbjct 23379 AAGCTTGCAAATGGGTTAACCACATGGAACCCTGGCTTTACAGGATTAGGATTAACTTTA 23320 Query 83208 CCCATGAAGGTCTGGGTTTTGACCGTACCGTCCTGTAC 83245 ||||| ||||| || ||||| || ||||| || || || Sbjct 23319 CCCATAAAGGTTTGTGTTTTTACTGTACCATCTTGCAC 23282 >seq31280 Length=10079 Score = 260 bits (288), Expect = 2e-64 Identities = 563/832 (68%), Gaps = 30/832 (4%) Strand=Plus/Minus Query 43197 TGAATT-CTCTTACGCTGGCGTACAGCAGTTGATCGGGAAATATCTGTTGCAGGATCGCA 43255 |||||| ||| ||||| | ||| | ||| || || ||||||||| | ||| | ||| Sbjct 1939 TGAATTTCTCCTACGCGGCCGTGAAACAGCTGGAAGGCAAATATCTGGTTCAGAACCGCG 1880 Query 43256 CCAACGGTGACATCTACGAAACACCGCAATATGCGTTTATGCTGATTGCTATGTGTCTGC 43315 | |||||| |||||||||| | || | || || ||| | || || ||| Sbjct 1879 TCTCCGGTGAGATCTACGAAAGCGCCCAGTTCCTGTACATTCTGGTAGCCGCCTGCCTGT 1820 Query 43316 A-TCAGGACGAACCGCGA---ACCCTGAGCGCATTTAATCATGTTGTCGATTTCTACAAC 43371 ||||| | | ||||| |||| || | ||| |||| | || ||||||| | Sbjct 1819 TCTCAGG-CTATCCGCGTGCGACCCGGATGG-ATTACATCAAG----CG-TTTCTACGAT 1767 Query 43372 GCAATTTCGGATCGTAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCT 43431 || ||||| ||| | || | || ||||| || ||| | || |||||||| || Sbjct 1766 GCGATTTCCACGTTTAAAATCTCCCTGCCGACGCCAATCATGTCGGGAGTGCGTACGCCA 1707 Query 43432 ACGCGTCAGTTTTCCAGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAAT 43491 || |||||||| | || || ||||||||| || || |||| ||| | || Sbjct 1706 ACCCGTCAGTTCAGCTCCTGTGTCCTGATTGAATGTGGCGACAGCCTGGATTCCATCAAC 1647 Query 43492 GCTGTAACCTCT---GCGATCGTGAAGTATATTTCACAACGCGCGGGTATCGGTGTTAAT 43548 || ||||| || || ||||| || ||||||||||||| ||||| ||| |||| Sbjct 1646 GCG---ACCTCCAGCGCTATTGTGAAATACGTTTCACAACGCGCAGGTATTGGTATTAAC 1590 Query 43549 GCTGGACACATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGC 43608 || || | || ||||| |||| || || || |||||||| | ||||| || Sbjct 1589 GCGGGTCGTATCCGCGCGCTGGGCAGCCCGATTCGCGGCGGTGAAGCTTTCCATACCGGT 1530 Query 43609 GTGATCCCGTTCTGGAAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTT 43668 |||||||||| || || | ||||||||||| ||||||||||| || || ||||| Sbjct 1529 TGTATCCCGTTCTACAAGCACTTCCAGACAGCGGTGAAATCCTGTTCGCAGGGCGGCGTC 1470 Query 43669 CGTGGTGGTGCTGCAACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTG 43728 ||||| || || || ||| ||| |||||||| |||||| ||||||| |||| |||| | Sbjct 1469 CGTGGCGGCGCAGCGACGCTGTTCTATCCGATGTGGCATCTGGAAGTAGAAAGCCTGTTA 1410 Query 43729 GTTCTGAAAAACAACAAAGGTGTTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTT 43788 || |||||||||||| ||||| || |||||| | |||||| |||| || || || Sbjct 1409 GTCCTGAAAAACAACCGTGGTGTGGAAGGTAACCGCGTACGTCACATGGACTACGGTGTG 1350 Query 43789 CAGCTTAACGATTTGATGTATAAGCGTTTAATCAATAACGATTACATCACACTGTTCAGC 43848 ||||| ||| | ||||||| |||| | | || ||| ||||||| ||||| ||| Sbjct 1349 CAGCTCAACAAAATGATGTACCAGCGCCTGCTGAAGGGCGAGGACATCACGCTGTTTAGC 1290 Query 43849 C---CTGACGTTGCAAATGATCGCCTGTATGATGCTTTCTATCAAGCTGATCAGACTGAG 43905 | | ||||| | | ||||||| ||||| |||| | || |||||| || Sbjct 1289 CCGTCAGACGTACC------TGGCCTGTACGATGCGTTCTTT---GCCGATCAGGACGAA 1239 Query 43906 TTCGAAGAACTCTATACCAGTTTGGAAAAAGACCCAACGGTACGCAAGAAACGTATTAAA 43965 || ||| || || |||| | ||| ||||| | | || ||| | ||| | ||| Sbjct 1238 TTTGAACGTCTTTACACCAAATACGAACAAGACAGCAGCATTCGTAAGCAGCGTGTGAAA 1179 Query 43966 GCAGCAGATTTGTTCCAGTTGCTTGTTCAGGAACGCGCACAGACCGGACGCA 44017 || | |||| ||||| | || | | ||||||||||| ||||| |||| Sbjct 1178 GCGGTAGATCTGTTCTCGCTGATGATGCAGGAACGCGCCTCTACCGGCCGCA 1127 >seq33108 Length=3479 Score = 174 bits (192), Expect = 2e-38 Identities = 146/179 (82%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 53416 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCT 53475 || ||||| || |||||| ||||||| || || || || || ||||| |||||||| || Sbjct 2783 GTGGAAGGCGGGCAGCACTTAAACGTTAACGTCCTGCGCCGTGAAACGCTGGAAGACGCC 2842 Query 53476 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 53535 |||||||||||||||||||| || ||| | || || || ||||| || ||||| || ||| Sbjct 2843 GTGAAACATCCTGAGAAGTATCCGCAGCTGACCATTCGTGTTTCCGGGTATGCCGTGCGC 2902 Query 53536 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAG 53594 |||||| | ||||| || ||||||||||| ||||| || ||| | |||||||||||||| Sbjct 2903 TTTAATTCGCTGACGCCTGAACAACAGCGTGACGTCATTGCCCGTACCTTTACGGAAAG 2961 >seq62284 Length=976 Score = 123 bits (136), Expect = 3e-23 Identities = 291/430 (68%), Gaps = 12/430 (3%) Strand=Plus/Minus Query 43396 TTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTT---GC 43452 ||||| || ||||||||||||||| | ||||| ||| ||||| || ||||| | Sbjct 486 TTACCAACACCTATTATGGCTGGTTTACGTACAAATACTCGTCAATT---CAGTTCTTGT 430 Query 43453 GTAGTGATTGAATC-AGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGT 43511 || || || |||| ||| || || | | | | ||||| | ||||| ||| | Sbjct 429 GTTGTAAT-GAATGTAGGAGACAGCCTAGACAGTATTAGTGCTGGTAATTCTGCAATCAT 371 Query 43512 GAAGTATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGG 43571 ||| |||||||| | || || | ||||| ||| ||| | | |||| ||| | || Sbjct 370 GAAATATATTTCTAAGAAAGCTGGACTAGGTGTAAATTATGGTCGCGTTCGTGCAGTAGG 311 Query 43572 TTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGA-TCCCGTTCTGGAAACATA 43630 ||| |||| ||||||||||| ||||| || |||||| ||| ||| ||||| || Sbjct 310 TTCAGAAATTCGTGGTGGTGATGCAGTCCACACAGGCTTGATTCCATTTCTGTCGGCAGT 251 Query 43631 TTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGT 43690 || | | | ||| |||||||||| || ||||| ||||| ||||| || ||||| | Sbjct 250 GGCA-AAAACTGTT-AATCCTGTTCTCAGGGTGGTGTTCGAGGTGGAGCAGCAACTGTAC 193 Query 43691 ATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTG 43750 | | ||| | ||||||| || ||||| | || | || ||| |||| || |||||| Sbjct 192 ACTTTCCACTATGGCATTACGAGTTTGAAGATCTTGTAGTACTG-AAAATAATAAAGGTA 134 Query 43751 TTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATA 43810 || | ||| | | || | |||||| | ||||| ||||| | ||||| Sbjct 133 CAGAAACCTCACGTGTAAGACAGTTAGATTATTGTTTTCAGATTAACAAAACTTTGTATC 74 Query 43811 AGCGTTTAAT 43820 | |||||||| Sbjct 73 AACGTTTAAT 64 >seq36028 Length=2231 Score = 100 bits (110), Expect = 3e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 46027 TATATCGAACACTTAACCGACCAACGTATGCGAGCGGTTGGGTTACAGTCT-CCGTTTAA 46085 ||||||||| || | ||| || ||||||| |||||||| | | ||| ||||| | Sbjct 795 TATATCGAATACATCACCAACATTCGTATGCAGGCGGTTGGCCTCGA-TCTGCCGTTCGA 853 Query 46086 ACCGAGTCCTAACCCGTATCCGTGGATGAACAAATGGTTGAAGTCTGACAACGTTCAGGT 46145 | || | | |||||| ||| ||||| ||| ||| || ||| || ||||||||||| Sbjct 854 AACGCGCTCGAACCCGATTCCCTGGATCAACGCCTGGCTGGTGTCCGATAACGTTCAGGT 913 Query 46146 AGCCCCGCAAGAGGTTGAAGTAAGTTCTTACCTGGTTGG 46184 |||||||| || || ||||| |||||||||||||| || Sbjct 914 TGCCCCGCAGGAAGTGGAAGTCAGTTCTTACCTGGTGGG 952 >seq38626 Length=1471 Score = 96.9 bits (106), Expect = 4e-15 Identities = 207/304 (68%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 155825 GAGAACGCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGGTAT 155883 || || || || |||||| |||| | | ||||||| || |||||| || |||| || || Sbjct 640 GAAAATGCCAATAAAGACAGCAAAG-TGATCCCGACCCAACGCGATTTGCTGGCCGGGAT 698 Query 155884 CGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCATGA 155943 || |||||||| | ||| | | || || || || | | || | |||||||| Sbjct 699 TGTGGCGAAACATTACGCCCAGCAGCAAATCCTGCCTCGTGATGTGGTTCAGGCGCATGA 758 Query 155944 TTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTC-ACGCCATACACAAACT 156002 || || ||||||||||| ||||| |||||| || ||| | |||| |||| Sbjct 759 GCGCGGCGAGATCCATTATCACGATCTCGATTACGCGCCTTTCTTCCCCAT-GTTTAACT 817 Query 156003 GCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAGACA 156062 || ||| | ||| ||||||| |||||| | || || || || ||||| ||||| || | Sbjct 818 GCATGCTGATCGATCTGAAAGGCATGCTGACCAACGGTTTTAAAATGGGCAACGCGGAGA 877 Query 156063 TCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCACAGA 156122 |||| || || | || || | | || ||||| | | || || |||| || ||| Sbjct 878 TCGAGCCGCCCAGGTCGATTGCTACCGCCACTGCGGTGACTGCGCAAATCATTGCCCAGG 937 Query 156123 TTGC 156126 |||| Sbjct 938 TTGC 941 >seq40411 Length=1793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 213/315 (68%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 157063 TCTACGCGAGGCGACCGAATCATGGAAACGTGCAACAGGATATGGATTTAGTCTGTATTC 157122 ||| |||| ||||||||| | |||||| | ||| || ||||| ||||| || || Sbjct 387 TCTGCGCGCGGCGACCGACGCCTGGAAAGCGGAAACGGGCTATGGCTTTAGCCTCTACAG 446 Query 157123 AAC-CCCTGCTGAATCTCTATGTCATCGCTTCTGCAAGCTGGATTAT-CAGAAGTTCGGA 157180 || ||| || || || ||||| | || |||||| |||||| | ||| || | Sbjct 447 TACACCCAGCGAAAACT-TATGTGACCGTTTCTGCCGACTGGATGCGGCTGAATTTGGTG 505 Query 157181 AGCGTCAAAGGGATTACGGATAAAGGCTGGTACACAAACAGTTTCCATCTGGACGTTGAT 157240 | || ||||| | || || ||||| | ||||| ||||| ||||||||||||||||| Sbjct 506 TG-GTAAAAGGCGTGACCGACAAAGGTTATTACACCAACAGCTTCCATCTGGACGTTGAG 564 Query 157241 CGCAAAGTAACACCATTCGAGAAAATCGACTATGAAGCCGATTATCATTACATCGCTACT 157300 || || | || | ||| |||||||| | |||||| |||| || | | | Sbjct 565 AAGAAGGTGAATCCTTACGAAAAAATCGATTTTGAAGCTCCCTATCCGCCACTCTCCAAT 624 Query 157301 GCTGGACATATCAGCTATGTAGAATTTCCTGATATGAAAAACAACCTGGAAGCACTTGAA 157360 | || |||| | || | |||| ||| || || | ||||||| | || || ||| Sbjct 625 GGCGGTTTTATCTGTTACGGCGAATATCCCAATGTGCAGCACAACCTTAAGGCGCTGGAA 684 Query 157361 AAAGTCTGGGATTAC 157375 | |||||||||||| Sbjct 685 GACGTCTGGGATTAC 699 >seq34305 Length=2218 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 53417 TTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTG 53476 ||||||| || ||||| || || || || ||| | || |||| || || || Sbjct 770 TTGAAGGCGGCCAGCATCTGAATGTTAACGTGATGAACCGGGAAATGTTGATGGACGCAA 711 Query 53477 TGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCT 53536 || | | |||||||| || || |||||||| ||||||||||| || ||||| ||||||| Sbjct 710 TGGATAACCCTGAGAAATATCCTCAGTTAACCATCCGCGTTTCGGGCTATGCCGTTCGCT 651 Query 53537 TTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTAC 53588 |||| | || || ||| || |||| ||||| || || | |||||||| Sbjct 650 TTAACTCGCTCACCAAAGAGCAGCAGCAGGACGTGATTACCCGTACCTTTAC 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575633707052000