Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031065.1 Length=159878 Score E Sequences producing significant alignments: (Bits) Value seq31280 116 4e-21 seq49234 98.7 1e-15 seq50823 89.7 5e-13 >seq31280 Length=10079 Score = 116 bits (128), Expect = 4e-21 Identities = 268/400 (67%), Gaps = 4/400 (1%) Strand=Plus/Plus Query 132583 TTGATTTGCAGACCATAATCTAGATGACGAATACGGTTTTCATCTACACCTTTGTTGTTC 132642 |||| |||| ||| || || | ||||| | ||||| | || ||||| |||||| Sbjct 1342 TTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTT 1401 Query 132643 TTTAATACAAGCAGGTTTTCAACTTCTAGATGCCACATTGGATAATAAAGAGTAGCTGCA 132702 || | || | |||| |||| ||||| ||||||||||| ||||| | || || ||||| Sbjct 1402 TTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGCGTCGCTGCG 1461 Query 132703 CCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAAAAA 132762 || ||||| || ||||| || ||||| ||||| || || ||||| || || || | || Sbjct 1462 CCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAAC 1521 Query 132763 GGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATC 132822 || || || ||||| |||| || | ||| ||| || || || Sbjct 1522 GGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGATA 1581 Query 132823 ATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATA--TACTTAATAATACTGTTAC 132880 ||| ||||| || || ||||| || || ||| ||| | || || | |||| | | Sbjct 1582 CGACCCGCGTTAATACCAATACCTGCGCG-TTG-TGAAACGTATTTCACAATAGCGCTGG 1639 Query 132881 TTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCGATAACTACACAAGAACTAAATT 132940 | ||| || || |||| ||| |||||| ||| || | ||||| || || || | Sbjct 1640 AGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACT 1699 Query 132941 GACGAGTAGGAGTACGAGCCCCCGCCATAATTGGTGTAGG 132980 |||| || || ||||| | |||| ||| ||||| || || Sbjct 1700 GACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGG 1739 >seq49234 Length=879 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/230 (71%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 55465 TGACGATTTTTAAGAAATAAAAGTTTATCATAAAAGAACGTGACATGGCCTGACCCAAGA 55524 || || ||| ||| | |||| | ||||| ||| || || || ||||| |||| || | | Sbjct 341 TGGCGTTTTGTAA-ATATAATAATTTATTATAGAA-AATGTAACATGACCTGTACCTA-A 397 Query 55525 ACAAAAGTAGAACTGATTTTAAAATCCGAAGGAT--GTTTACCAGCCTTAACGTGCTTAC 55582 | | |||| ||||||||||||||| | ||| |||||||||| | |||||||||| Sbjct 398 ATGTAGGTAGTACTGATTTTAAAATC--ATTGATTCGTTTACCAGCTTGTACGTGCTTAC 455 Query 55583 GTACTGCTCCAAAAACACGAGGAAGTTCGCGGTACTCGGCAATTAAATGCTGATCAGCAA 55642 | || || || || ||||| || | ||| ||||| || || || | ||| || ||||| | Sbjct 456 GAACAGCACCGAATACACGTGGCAATTCACGGTATTCAGCCATAAGATGTTGGTCAGCTA 515 Query 55643 GTTCAGATACTAAAGTCAAATTTATACGAGTCAT--AAGTTTCTCCTGTA 55690 ||| |||| | ||| ||||| ||||| || ||||||| || Sbjct 516 ATTCTTGTACTGGTACGAGATTGATACGGGTCATTCAAAATTCTCCTTTA 565 >seq50823 Length=3276 Score = 89.7 bits (98), Expect = 5e-13 Identities = 132/183 (72%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 55495 TAAAAGAACGTGACATGGCCTGACCCAAGAACAAAAGTAGAACTGATTTTAAAATCCGAA 55554 ||||| || || ||||| |||| ||||||| | | | ||| ||||||||||| | Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 55555 GGATGTTTACCAGCCTTAACGTGCTTACGTACTGCTCCAAAAACACGAGGAAGTTCGCGG 55614 || ||| ||||| | |||||| || | |||||| ||||| ||||| || | ||| || Sbjct 188 ATAT-TTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 55615 TACTCGGCAATTAAATGCTGATCAG-CAAGTTCAGATACTAAAGTCAAATTTATACGAGT 55673 || || || || | ||| ||||| | ||| | | || | || | |||||||| ||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACT-AAATTTATCCGAGT 305 Query 55674 CAT 55676 ||| Sbjct 306 CAT 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510648524344000