Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031069.1 Length=32729 Score E Sequences producing significant alignments: (Bits) Value seq115158 937 0.0 seq29199 545 5e-151 seq123790 327 2e-85 seq32415 208 2e-49 seq115959 194 4e-45 seq125381 80.6 6e-11 >seq115158 Length=1188 Score = 937 bits (1038), Expect = 0.0 Identities = 759/909 (83%), Gaps = 15/909 (2%) Strand=Plus/Plus Query 18111 AATGATTAATTTTAAATTACGACTAAAAAATAAAGCCACATTAGTCGCTATTATCTCAGC 18170 ||||||||||||||||||||| | |||||||| | ||| |||| ||| |||||||||| Sbjct 286 AATGATTAATTTTAAATTACGTTTGCAAAATAAAACTACACTAGTAGCTCTTATCTCAGC 345 Query 18171 AGTATTCCTTATGCTGCAACAATTAGGGCTTCATATCCCTAGCAACATTCAAGAGGGAGT 18230 ||||||||||||| ||||||||||||||||| | || || ||| || ||||| | || Sbjct 346 AGTATTCCTTATGTTGCAACAATTAGGGCTTGAAATTCCACACAATATCCAAGACGCTGT 405 Query 18231 AAATACTTTTGTGGGAATTTTAGTGATTCTCGGAATTGTTACCGACCCAACTACTAAGGG 18290 |||||| || | | |||||| || || |||||||| |||||||||||||| |||||||| Sbjct 406 AAATACATTCATTGCAATTTTGGTTATCCTCGGAATCGTTACCGACCCAACCACTAAGGG 465 Query 18291 TATCGGTGACAGTGAACAAGCTTTGAGTTACATCAAACCACTAGACGATGATAAGGAAGA 18350 || | ||||| |||| ||| ||||| || ||||||||||||| ||||||| Sbjct 466 GATTGCAGACAGCGAACGAGCATTGAGCTATGAACAACCACTAGACGAA---AAGGAAGG 522 Query 18351 AAAATAGTATGAGCG-TACAACAATCTATTGTAAATTGGTTTGTTAGCCATC---GCAAA 18406 ||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| Sbjct 523 AAAATAGTATGAGCGATACAACAATCTATTGTAAATTGGTTTGTTAACCATCGAGGCAA- 581 Query 18407 CTATTGACTTACTCAATGTTTGGATCGCGTAATGGAGCAGATGGCACAGCTGACTGTTCT 18466 |||||| || ||||||| ||| || || || |||||||| || ||||||||||| ||| Sbjct 582 --ATTGACCTATTCAATGTATGGGTCACGCAACGGAGCAGACGGTACAGCTGACTGCTCT 639 Query 18467 GGTTCTATGTCTCAAGCCTTAAAAGAGGCAGGCATTCCTATCCAAGGGCTACCATCTACT 18526 ||||| || || |||||| ||||||| || || ||| ||| ||||| |||||||||||| Sbjct 640 GGTTCCATATCACAAGCCCTAAAAGAAGCTGGTATTGGTATTCAAGGTCTACCATCTACT 699 Query 18527 GTCACTCTTGGTCAGCAACTTGCAAAGAATGGCTTCTATCGTGTCAGTCGCAACGAGGAC 18586 || || || ||||| |||||||| || ||||| |||||||| || ||| || | || Sbjct 700 GTTACACTAGGTCAACAACTTGCCAAAAATGGATTCTATCGAGTAAGTATTAATCAAGAT 759 Query 18587 TGGGATGCACTTATGGGCGACATCGTAATGATGTCGTGGGGTGCTGACATGTCACAATCT 18646 |||||||| | | ||||| || || | ||||| |||||| |||| ||||| |||| Sbjct 760 TGGGATGCTTTGACAGGCGATATTGTGTTAATGTCATGGGGTTCTGATATGTCCACATCT 819 Query 18647 GGCGGAGCTGGGGGTCACGTTGGTGTCATGATGGACGCTACATACTTCATTAGTTGCGAC 18706 ||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 820 GGCGGAGCTGGAGGGCACGTTGGTGTCATGATGGATGCTACATACTTTATTAGTTGCGAT 879 Query 18707 TATTCAACCCAAGGTGCAGTAGGCCAAGCTATCAATACATATCCTTGGAACGACTACTAT 18766 |||||||| ||||| ||| || |||||||||||||| || || ||||| ||||||||| Sbjct 880 TATTCAACTCAAGGGGCACCTGGGCAAGCTATCAATACTTACCCGTGGAATGACTACTAT 939 Query 18767 GCAGCGAACAAGCCTTCATATATTGAAGTTTGGCGTTATTCTGACTCAGCAACACAAACG 18826 ||||||||||||||| ||||||| || || ||||||||||||||| | ||| | ||||| Sbjct 940 GCAGCGAACAAGCCTGCATATATCGAGGTGTGGCGTTATTCTGACACTGCACCGCAAACC 999 Query 18827 AATAACCAAGCCAATACAGCAG-TAG-CACCACAACAAAAGGCTTACTATGAAGCCAATG 18884 || |||||||| |||||||||| ||| |||||||||||||||||||||||||||| |||| Sbjct 1000 AACAACCAAGCTAATACAGCAGCTAGACACCACAACAAAAGGCTTACTATGAAGCTAATG 1059 Query 18885 ATGTTCAATTCGTTAAT-GGAATTTGGCAGATCAAATGTGATTACCTCGTACC-AATTGG 18942 | ||||||||||||||| ||||||||||||||||||||||| || | | ||| |||| Sbjct 1060 AAGTTCAATTCGTTAATGGGAATTTGGCAGATCAAATGTGACTATTTGGCACCTGGTTGG 1119 Query 18943 ATTCGACTGGGTTAACTAATTTTCGGCTCAGTATAAACTAAGT-GAACGCAAACAAAGCG 19001 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1120 ATTCGACTGGGTTAACTAATTTTCGGCTCAGTATAAACTAAGTGGAACGCAAACAAAGCG 1179 Query 19002 GTGTCATGC 19010 ||||||||| Sbjct 1180 GTGTCATGC 1188 >seq29199 Length=407 Score = 545 bits (604), Expect = 5e-151 Identities = 361/399 (90%), Gaps = 1/399 (0%) Strand=Plus/Plus Query 23537 TATGAGTTTAGATCAAACAGCTAGACAGATGCGACAGCTATATATGACTACTAGTGATAA 23596 ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 1 TATGAATTTAGATCAAACAGCTAGACAGATGCGACAGCTATATATGACCACTGCCAATAA 60 Query 23597 ATACTGCGAGAAGCACAATCGAAACTTTGTCACTATTCAGCTACCAAACAGCAAGCCATA 23656 ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 61 ATACTGCGAGAAGCATAATCGAAACTACGTCACTATTCAGCTACCAAACAGCAAGCCATA 120 Query 23657 CACTGTATGTGAGACGTGCCATCGTGAAGAGCAAGAGCGACAGAATTCTATTAAAGCACA 23716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CACTGTATGTGAGACGTGCCATCGTGAAGAGCAAGAGCGACAGAATTCTATTAAAGCACA 180 Query 23717 AGAACAGTTTGAGCGTGAGCAAGAGCAGAAGCGTCTCTACTTTCTCAAAGATTTCAGTTT 23776 ||||||||||||||||||||||||||| || || | |||||||||||||||||||| || Sbjct 181 AGAACAGTTTGAGCGTGAGCAAGAGCAAAAACGCTTATACTTTCTCAAAGATTTCAGCTT 240 Query 23777 GATGGATGATGATTTAGAAAGTGCTAGCTTTGAAACTTACCATGCTGTTACCAAAGAGCA 23836 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 241 GATGGATGATGATTT-GAAAGTGCTAGCTTTGAAACCTACCATGCTGTTACCAAAGAGCA 299 Query 23837 AAAGGAAGACTTGAAGAACGTCCGAAGCCAGCTTAAAGGCTATCTTGATGGTCAAGACTA 23896 |||||||||||||||||| || ||||| || || | ||| || | || || || || || Sbjct 300 AAAGGAAGACTTGAAGAATGTTCGAAGTCAACTCAGAGGATACTTAGACGGACAGGATTA 359 Query 23897 TAACATTGTTCTTATCGGTGATACTGGTGTCGGTAAGAG 23935 ||||| ||||| || ||||| || |||||||| ||||| Sbjct 360 CAACATAGTTCTAATAGGTGACACGGGTGTCGGCAAGAG 398 >seq123790 Length=336 Score = 327 bits (362), Expect = 2e-85 Identities = 230/261 (88%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 31646 GCAATTAATACAGTATATAAAGAGCTTGGAATTCTAACGCCTCGAAAGGTAATCCAGTTA 31705 |||||||| || ||||||| ||| |||| | | |||| ||||| ||||||||||| ||| Sbjct 1 GCAATTAACACTGTATATACAGAAATTGGCAGTTTAACACCTCGCAAGGTAATCCAATTA 60 Query 31706 GAGGGTCTTCTGTCTAGAGAGCTATTCGGAAAGATAGCTAAATATGTATTTAATAAGTAT 31765 ||||||||||||||||||||||||||||| |||||||| || || || |||||||||||| Sbjct 61 GAGGGTCTTCTGTCTAGAGAGCTATTCGGTAAGATAGCGAAGTACGTCTTTAATAAGTAT 120 Query 31766 GAGTGGCCAGAAAGCCTAGATAGTGAAGTTGATCGAATTTATTTAGAATATCGCACTAAA 31825 || |||||||||||||||||| | ||||||| |||| ||||||||||||||||||||| Sbjct 121 GAATGGCCAGAAAGCCTAGAT-GAAGAGTTGATAGAATCTATTTAGAATATCGCACTAAA 179 Query 31826 GGTGAACTAGGTCGTGATAAAGAAAGTGTTAAACGCACACTATATAAAGCGATTTATATG 31885 ||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 180 GGTAATCTAGGTCGTGATAAAGAAAGTGTTAAACGCACACTATATAAAGCGATGTCTATG 239 Query 31886 GGCTTGTAGCGGTTCGATTCC 31906 ||||||| ||||||| ||| Sbjct 240 GGCTTGTGAGGGTTCGACTCC 260 Score = 102 bits (112), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 31996 GGGTTCGACTCCCTTGTCAGTCGTTAGTCTGTCATGACTAGGTAACtttttttttGACAC 32055 |||||||||||||| | | ||||||||||| |||||||| || ||||||||||| Sbjct 249 GGGTTCGACTCCCTCGCTCGCTGTTAGTCTGTCGTGACTAGGAAA----TTTTTTGACAC 304 Query 32056 TCGCATCGCTGACAGACCGATGCACAAACCCA 32087 ||| ||||||||||||||||| |||||||||| Sbjct 305 TCGTATCGCTGACAGACCGATACACAAACCCA 336 >seq32415 Length=302 Score = 208 bits (230), Expect = 2e-49 Identities = 144/163 (88%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 24245 GAAGACAGGACTTGGAACTACTAACGAACACGTTTACAAGTTTAAAACACAGCAAGACAA 24304 |||||||||||| ||||| || || ||||| ||||| | |||||||| | |||||||| Sbjct 163 GAAGACAGGACTGGGAACAACCAATGAACATGTTTATCAATTTAAAACTAAACAAGACAA 104 Query 24305 GAGGATGATGTTATGACTGAAACAGAAGTAAAAATAAAGCTCTTTGAGGACTACGAGCGC 24364 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 103 GAGGATGATGTTATGACTGAAACAGAAGTAAAAACAAAGCTCTTTGAGGACTATGAGCGC 44 Query 24365 ATTCATGGTCTTGTAGTATCAGAAGGGCACAAACAGAAAATGA 24407 |||||||| |||||| | ||| ||| |||||| |||||||||| Sbjct 43 ATTCATGGCCTTGTATTCTCACAAGAGCACAAGCAGAAAATGA 1 Score = 161 bits (178), Expect = 2e-35 Identities = 92/94 (98%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 24537 GTAGGTGGTATAAATTATCTAGTTACCACTTAAAAACGATAAGAGACCCCTAAAATTGAG 24596 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 250 GTGGGTGGTATAAATTATCTAGTTACCACTTAAAAACGATAAGAGACCCCTTAAATTGAG 191 Query 24597 AATTAGGGGCATTCAAAACaaaaaaaGGAAGACA 24630 |||||||||||||||||||||||||||||||||| Sbjct 190 AATTAGGGGCATTCAAAACAAAAAAAGGAAGACA 157 >seq115959 Length=416 Score = 194 bits (214), Expect = 4e-45 Identities = 124/130 (95%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 20368 GCCATTTGTAAAAAATACAACCTTAAATCGTCTGATTTGTAT-GGCTTTTGATTTTAAAA 20426 |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 416 GCCATTTGTAAAAA-TACAACCTTAA-TCGTCTGATTTGTATTGGCTTTTGATTTTAAAA 359 Query 20427 CTTGAATTAAATTCAAGTTAGAAAGGAACAATATGAACGAAATAGCAACAAATGATTTTA 20486 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 358 CTTGAATTAAATTCAAGTTAGAAAGGAACAATATGAACG-AATAGCAACAAATGATTTTG 300 Query 20487 ATTACTCTTT 20496 | |||||||| Sbjct 299 ACTACTCTTT 290 >seq125381 Length=275 Score = 80.6 bits (88), Expect = 6e-11 Identities = 183/271 (68%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 31347 TTGACAATGTGATTAAAGAGCGTTCTAAGTTATCACCCGCGACATTAGACGATATGCGTG 31406 |||| || ||| ||||||||||||| || ||||||| | ||||| ||||||||| ||| Sbjct 273 TTGATAACGTGGTTAAAGAGCGTTCGAA-CTATCACCTTCAACATTGGACGATATGAGTG 215 Query 31407 AGTATATCACGGATGGACTAGCTGACGACTTACAGGATTATCTATCAAAACACTGTTTT- 31465 ||||| | ||| | || |||| | ||||||| || ||||| || | ||| || | Sbjct 214 AGTATCTTACGAACGGCCTAGTGAATGACTTACGAGAGTATCTGGCAGAGAACTATTCTG 155 Query 31466 --AGTAGCTCCGTAAAGTGTCGGCCAGATACCGACAAGAGAAATGCTGGACTGCCTGAGG 31523 || || | || | | | ||||||| | || || || ||||| ||| || ||| Sbjct 154 ACAGAAG-TGGGTCA--TCTAAGCCAGATGCTGATAAAGCTAACGCTGGGCTGACTAAGG 98 Query 31524 AATTCTTTAAACAGTATTGCGAGGAAATCAAATCATTAAAAGCTAAATACCCAAACAGCT 31583 || | || | || | | |||||||| || |||| ||| | |||| ||| | Sbjct 97 AACTTTTCCGAGAGCTTCGAAAGGAAATCGAAGAGTTAAGAGCAGCACACCCTAACCGTA 38 Query 31584 TCACCGCTTACATCATGGATGTTAAAGGATG 31614 | | | || | ||||| || |||||||| Sbjct 37 ACGCAGAATATGTTATGGAAGTGAAAGGATG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104449333782600