Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq43510 293 1e-74 seq60516 215 3e-51 seq2347 194 1e-44 seq28361 154 9e-33 seq51075 147 1e-30 >seq43510 Length=3912 Score = 293 bits (324), Expect = 1e-74 Identities = 558/797 (70%), Gaps = 30/797 (4%) Strand=Plus/Minus Query 794 GACCTGTTGCGCGACATCCTGGAGACTGGCAAGTCGAAGGATGATCGCACCGGCACCGGC 853 |||||| ||| || | |||||| |||| | ||| || ||||||||||||||| Sbjct 1202 GACCTGCTGCAGCACGTGCTGGAGCATGGCGCGGAGAAATCCGACCGCACCGGCACCGGC 1143 Query 854 ACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGGCTTCCCGCTGGTC 913 |||| ||| ||||||| ||| |||| | |||||||| ||| |||||||| |||||| Sbjct 1142 ACGCGCAGCGTGTTCGGCTGGCAGATGCGTTTCGACCTCAACGACGGCTTCCCCCTGGTC 1083 Query 914 ACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTGGTTCCTCAGTGGC 973 ||||| ||| | ||| | ||| | | | |||| | ||||||||||| | ||| Sbjct 1082 ACCACCAAGAAGCTGCACCTGCGCTCGATCGTGCACGAGTTGCTGTGGTTCCTGAAGGGC 1023 Query 974 GACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGGACGAGTGGGCCGA- 1032 || || ||| | ||||| |||||| |||| ||||||||||||||||||||| Sbjct 1022 GAGACCAACATCGCCTATCTCAAGGACAACAAGGTCAGCATCTGGGACGAGTGGGCCGAT 963 Query 1033 -CGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGCACTGGCATGTCGAGG 1091 ||| || ||| ||||| || || |||||| ||||||||||| |||| | || | Sbjct 962 GCGCAGGGCGAA--CTCGGCCCGGTGTACGGCAAGCAGTGGCGGCGCTGGACCGGCGCCG 905 Query 1092 ACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCG-TGGAGCTGCTTC-GCGAGGA 1149 |||| | || | || |||||||| | | || | |||| | | ||| | Sbjct 904 ACGGCCG-----CGAG-ATCGACCAGATG-CAGTGGCTGGTGGACGAGATCAAGCGCA-A 853 Query 1150 CCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCT-CAGCGACATGG 1208 || || ||||| ||| ||| | ||| |||||||| | || || | || | |||| Sbjct 852 TCCGGATTCGCGGCGGCTGGTGATCAGCGCCTGGAACGTGGCCGAACTGCCGC-AGATGG 794 Query 1209 CACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGC 1268 | || |||||||||| | |||||||| | ||||| ||||||||| |||| ||||| Sbjct 793 CGCTGATGCCGTGCCACAGCCTGTTCCAGTTCTACGTGGTCGACGGCAAGCTCA-GCTGC 735 Query 1269 -AGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTAC 1327 || | ||||||||||||| ||||| ||||| || ||||||||||| |||||| ||| Sbjct 734 CAGCTGTACCAGCGCAGCGGCGACATTTTCCTGGGCGTGCCGTTCAACATCGCCAGCTAC 675 Query 1328 GCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGCTGATCTGG 1387 ||||| || | |||||| | |||||| |||||||| | ||||| || | || Sbjct 674 GCGCTGCTGACCCACATGGTGGCGCAGGCCACCGGCCTGGGCGTGGGCGA--TTTCGTGC 617 Query 1388 ACCGGC--GGCGACTGC-CACATCT-ACAACAACCACGTCGACCAGGCGCTGATGCAGCT 1443 || || ||||| ||| ||| | | || ||||||| |||| ||||||| || || Sbjct 616 ACACGCTGGGCGA-TGCGCACCTGTAACTCCAACCACTTCGAACAGGCGCGCGAACAACT 558 Query 1444 -CCGCCGACGACCGCGGCCCTACCCGAGGCTCGTGCTACACCACGC-GCCGTCGA--TCT 1499 ||| ||| |||||||| | ||| || | ||| | | || | | ||| | | Sbjct 557 GGCGCGCACG-CCGCGGCCGTTGCCGCGGTTGCGGCTGAATCCGGCGGTCACCGACCTGT 499 Query 1500 TCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACCCGTCGATCAAGG 1559 ||| || | ||||| ||||| | ||| | ||| |||||||| ||| ||||||||| Sbjct 498 TCGCCTTCACCTACGACGACATCGCCATCGAGGGCTATGACCCGCATCCGGCGATCAAGG 439 Query 1560 CGCCGGTGGCCGTCTGA 1576 ||||||||||||| ||| Sbjct 438 CGCCGGTGGCCGTATGA 422 >seq60516 Length=573 Score = 215 bits (238), Expect = 3e-51 Identities = 374/533 (70%), Gaps = 17/533 (3%) Strand=Plus/Plus Query 794 GACCTGTTGCGCGACATCCTGGAGACTGGCAAGTCGAAGGATGATCGCACCGGCACCGGC 853 |||||| ||||| | | | ||| |||| | ||||| || || |||||||||||| Sbjct 47 GACCTGATGCGCCATGTGCGCGAGCACGGCACCTTCAAGGAAGACCGTACCGGCACCGGC 106 Query 854 ACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGGCTTCCCGCTGGTC 913 || ||| |||||| |||| |||| | | |||| |||| |||||||| | ||| Sbjct 107 ACCTACAGCGTGTTCGGTTACCAGATGCGCTTCAACCTGGCCGATGGCTTCCCCATCGTC 166 Query 914 ACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTGGTTCCT-CAGTGG 972 ||||| ||| |||| | || || | | ||||| ||||||||||| ||| || Sbjct 167 ACCACCAAGAAGTGCCACCTGAAGTCCATCATCCATGAACTACTGTGGTTCCTGCAG-GG 225 Query 973 CGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGGACGAGTGGGCCGA 1032 || || || | ||| || || ||||||||||||| ||||||||||||||||||||| Sbjct 226 TGATACCAATATCAAGTACCTGAAGGACAACGGCGTCAGCATCTGGGACGAGTGGGCCGA 285 Query 1033 CGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGCACTGGCATGTCGAGGA 1092 || ||| |||||||| || || |||||| |||||||| ||||| | | | Sbjct 286 CGAGAACGGCAACCTCGGCCCGGTATACGGCTACCAGTGGCGCAGCTGGCCGGCGCCGAA 345 Query 1093 CGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCG-TGGAGCTGCTTCGCGAGGACC 1151 ||| | || ||| ||||||||| | || | | ||| || || ||| ||| Sbjct 346 CGGCG------AGTCGATCGACCAGATC-AGCAAGCTGATCGAGATG-ATCAAGAGAACC 397 Query 1152 CTGACTCGCGCCGGAACGTGGTATCCGCATGGAA--CGTCGGTGACCTCAGCGACATGGC 1209 | |||||||||||| | || || || ||||| || || || | ||| ||||| Sbjct 398 CGGACTCGCGCCGGCTGATCGTCTCGGCCTGGAATCCGGCGCTG--GTGGACGAGATGGC 455 Query 1210 ACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTG-C 1268 || | |||||||| |||||||| | || |||| ||||||| |||| |||| | Sbjct 456 CCTGCCGCCGTGCCATGCGCTGTTCCAGTTCTATGTCGCCGACGGCAAGCTC-AGCTGCC 514 Query 1269 AGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCC 1321 || | ||||||||||||| ||||| ||||| || ||||||||||| |||||| Sbjct 515 AGCTGTACCAGCGCAGCGGCGACATTTTCCTGGGCGTGCCGTTCAACATCGCC 567 >seq2347 Length=4848 Score = 194 bits (214), Expect = 1e-44 Identities = 407/598 (68%), Gaps = 14/598 (2%) Strand=Plus/Minus Query 836 GATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACC 895 || |||||||||||||| || ||| |||||| |||| || | | |||||| || Sbjct 2066 GACCGCACCGGCACCGGGACCTACAGCGTCTTCGGCTACCAGATGAGATTCGACCTGGCC 2007 Query 896 GAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTT 955 |||||||| || ||||||||||| ||| ||| | | ||| | ||||||| Sbjct 2006 GAGGGCTTTCCCCTGGTCACCACCAAGAAATGCCATCTGAGATCCATCATCCACGAACTG 1947 Query 956 CTGTGGTTCCT-CAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCAT 1014 ||||||||||| ||| ||||| || || | || || ||||| ||||| |||| Sbjct 1946 CTGTGGTTCCTGCAG-GGCGAGACCAATATCCGCTACCTGAAGGACAATGGCGTGTCCAT 1888 Query 1015 CTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCG 1074 ||||||||| |||||||||| ||| | || || || ||||||||| |||||||| Sbjct 1887 CTGGGACGAATGGGCCGACGAGAACGGTGAGCTGGGACCGGTCTACGGCTACCAGTGGCG 1828 Query 1075 GCACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGTGGA 1134 ||||| || | || | ||| | | || ||||||||| | | | ||||| Sbjct 1827 CAGCTGGC----CGGCACCCGATGGTCGCCAT--ATCGACCAGATCGCCGGGGTGGTGGA 1774 Query 1135 GCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAA--CGTCGGT 1192 || | |||| | || |||||||| || | || || || ||||| || | | Sbjct 1773 CATGATCCGCGCCAAGCCCGACTCGCGGCGCCTGATCGTCTCGGCCTGGAATCCGGCCCT 1714 Query 1193 GACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGAC 1252 | | ||| ||||| || | |||||||| |||||||| | || |||| ||| Sbjct 1713 GG--TGGACGAGATGGCGCTGCCGCCGTGCCATGCGCTGTTCCAGTTCTATGTCGCCGAT 1656 Query 1253 GGCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTT 1311 || || || ||||| || | || |||||| ||| ||||| |||||||| ||||| || Sbjct 1655 GGTCGCCTGA-GCTGCCAGCTGTATCAGCGCTCCGCCGACATCTTCCTCGGCGTGCCCTT 1597 Query 1312 CAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGT 1371 ||| |||||| || ||||| || | | ||| | || ||| |||| |||| | Sbjct 1596 CAACATCGCCAGCTATGCGCTGCTGACCCTGATGGTGGCCCAGGTCACCGGGCTGCAGCC 1537 Query 1372 GGGTGAGCTGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAG 1429 ||| || | |||||||||||||| || ||||| |||| ||| ||| | || ||| Sbjct 1536 GGGCGAATTCATCTGGACCGGCGGTGATTGCCATCTCTATGCCAATCACCTGGAGCAG 1479 >seq28361 Length=3781 Score = 154 bits (170), Expect = 9e-33 Identities = 305/438 (70%), Gaps = 15/438 (3%) Strand=Plus/Minus Query 1148 GACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCTCAGCGACATG 1207 || || || || ||||| | | | || || || |||||||| || || || || ||| Sbjct 2369 GATCCGGATTCCCGCCGCATCATTGTCTCGGCGTGGAACGTGGGCGAACTGGATGAAATG 2310 Query 1208 GCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTG 1267 || || |||||||| | | |||||| | ||||||| || ||| ||||||| ||| Sbjct 2309 GCGCTGGCTCCGTGCCATGCCTTTTTCCAGTTCTACGTCGCGGATGGCAGGCTCTC-CTG 2251 Query 1268 -CAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTA 1326 ||| | |||||||| | ||||| ||||| || ||||||| || |||||| || Sbjct 2250 TCAGCTTTACCAGCGTTCCTGCGACATTTTCCTGGGGCTGCCGTTTAACATCGCCAGCTA 2191 Query 1327 CGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGCTGATCTG 1386 ||||| || | ||| ||| ||||||| ||| || ||| ||| ||||| | |||| Sbjct 2190 TGCGCTGCTGGTGCATATGGTCGCGCAACAGTGCGATCTGGAGGTCGGTGACTTTGTCTG 2131 Query 1387 GACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGGCGCTGATGCAGCT-CC 1445 |||||||||||| ||| | |||| ||||||| | || ||||||| |||| || | Sbjct 2130 GACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCCTGCAACTGAC 2071 Query 1446 GC-CGACGACCGCGGCCCTACCCGAGGCTCGTG-CTACAC-CACGC--GCCGTCGATCTT 1500 || ||| |||||| | | |||| ||| ||| || || || || ||| ||| | || Sbjct 2070 GCGCGA--ACCGCGTGCGTTACCGAAGCTGGTGATTAAACGCAAGCCTGCC-TCGCTGTT 2014 Query 1501 CGACTACCGGTACGAGCACATCCACCTCGTGAA--CTACGACCCGCACCCGTCGATCAAG 1558 ||||| || | ||| | | | | |||| ||||| ||||| || | ||||| Sbjct 2013 TGACTATCGTTTCGACGATTTTGAGAT--TGAAGGTTACGATCCGCATCCCGCCATCAAA 1956 Query 1559 GCGCCGGTGGCCGTCTGA 1576 |||||||| || |||||| Sbjct 1955 GCGCCGGTTGCGGTCTGA 1938 >seq51075 Length=376 Score = 147 bits (162), Expect = 1e-30 Identities = 187/254 (74%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 831 AGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACC 890 |||| |||||||||||| ||||||||||||| |||||||| ||| |||| | ||||| Sbjct 19 AGGACGATCGCACCGGCGTCGGCACGCTGAGCGTCTTCGGCGCGCAGATGCGCTTCGACC 78 Query 891 TCACCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACG 950 || |||| ||||| || | |||| || ||| | ||| | ||| | | | ||| Sbjct 79 TCGCCGAAGGCTTTCCCGTCCTCACGACCAAGAAGCTGCACCTGCGCTCGATCGTGCACG 138 Query 951 AACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCA 1010 | | ||||||||||| | ||||| || ||| | ||||| |||||| |||| Sbjct 139 AGTTGCTGTGGTTCCTGAAGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTCA 198 Query 1011 -CCATCTGGGACGAGTGGGCCGA--CGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGC 1067 |||||||||||||||||||||| ||| || ||| ||||| || || |||||| || Sbjct 199 GCCATCTGGGACGAGTGGGCCGATGCGCAGGGCGAA--CTCGGCCCGGTGTACGGCAAGC 256 Query 1068 AGTGGCGGCACTGG 1081 ||||||||| |||| Sbjct 257 AGTGGCGGCGCTGG 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295660934400300