Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq29160 331 2e-86 seq38246 230 6e-56 seq44258 156 1e-33 seq34674 149 2e-31 seq82134 131 4e-26 seq74443 104 6e-18 >seq29160 Length=3305 Score = 331 bits (366), Expect = 2e-86 Identities = 643/934 (69%), Gaps = 29/934 (3%) Strand=Plus/Plus Query 32151 GTGTAGACACCCATGATGACGTCAGGGCAATGCAGGCGTGACCAGCGCTTTGTCGCCAGG 32210 ||||| ||||| | |||||| || |||||||||| ||| | ||| | || ||||| Sbjct 2188 GTGTAAACACCGAGGATGACATCCGGGCAATGCAAGCGGGCCCACCTTTTAACGGCCAGA 2247 Query 32211 TATGCGAGTTGTTGTTTAGGATCACTGGCCCAAAGAGTGGAGTTTCTTACCTGTGCCTGT 32270 || ||||| || ||||| ||||| || ||||| || || || ||||| |||||||| ||| Sbjct 2248 TACGCGAGCTGCTGTTTCGGATCGCTCGCCCACAGCGTTGAATTTCTGACCTGTGCTTGT 2307 Query 32271 GACAGTAGCAATTCCAGGACACGTGGTTTATCTTCACCCTTCATCGTGGCCCATACACGC 32330 || | |||| |||||| || || |||| | ||| |||||| || ||||| || || Sbjct 2308 GATAACAGCAGTTCCAGTACGCGAGGTTCCTGCTCATTCTTCATTGTCGCCCAGACGCGG 2367 Query 32331 ACTCCACAACCTGCTTCATCTTTTAATGTCCATGCTGGAGCGATGTAGGTATTACCCTTC 32390 || || || | |||||||||| | |||||| | | | || |||| ||| || || Sbjct 2368 ACGCCGCAGTCGGCTTCATCTTCAAGTGTCCAGCCGGAAACGGTGTACTTATGTCCTTTA 2427 Query 32391 TGGGATGTTTTCTCTACAAACTTGCCGATCACGTTTTCCCACGGTCCGAACCACTCATAG 32450 || ||||| || ||||| || |||| || |||||||| || |||||||||||||| Sbjct 2428 CCTGACGTTTTTTCGACAAATTTACCGAGGACTTTTTCCCATGGGCCGAACCACTCATAA 2487 Query 32451 T-TGATACGGTCTTTCGTTGGCGACATCGTGGTGATCACCGCATTTACCAACTGGGCCTC 32509 | || | ||||| || || | |||||| ||||| ||||| || |||| || ||||| Sbjct 2488 TGTGGT-CGGTCACGGGTGGGTGCCATCGTTGTGATAACCGCGTTCACCAGTTGTGCCTC 2546 Query 32510 ATAACCGAGAGTGCCGCTAACGACATGA--GTTTTCTGCGCGACTGCGAATGGATTCATA 32567 ||| || || ||| | || || || |||||||| || || ||||| || ||||| Sbjct 2547 ATAGCCAAGTACGCCATTTAC--CAGGAAGGTTTTCTGAGCAACGGCGAAGGGGTTCATG 2604 Query 32568 CCCCACTGAGCAGCCTGCATTGCCACAGCCATGCAATCAGCAGGCTTTCCGGCGAGGTGA 32627 | |||||| || ||||||||||| ||||| | || ||||| | ||||| || ||||| Sbjct 2605 CGCCACTGTGCGGCCTGCATTGCGACAGCAAGACAGTCAGCTGTTTTTCCTGCCAGGTGT 2664 Query 32628 GCCGGTACGGTCACGCGACTTTGAGACATGACCTCGGCAAACTTCATCAACTGGTTCAAC 32687 |||||||||| || | || | ||||| || ||||| |||| || || || Sbjct 2665 GCCGGTACGGAAACTCTGCTGCTGGCCATGATGTCAGCAAAGCGAATCAGCTTGTCCAGT 2724 Query 32688 CCTTCAGGGCTAAAAATGGTGGCAGCGGTGCCAGCTATGGCAGTGTCTACTGGTTGGTTA 32747 | || || || ||||| ||| || ||||| || | ||| || | | ||| | | Sbjct 2725 GCATCCGGACTGAAAATCATGGATGCAGTGCCTGCATTTTCAGCATC-AGT-GTTCATCA 2782 Query 32748 ATGGTTGAGATTTCGTTGCTCATACGTACATATCCTGTTTGCGTGCCCACTCAGGGCGTT 32807 ||| | | |||| ||| | |||| || |||||||| ||||||| Sbjct 2783 GTGG----------GGTATTCAT-CGTGGTTTTCCTTTTAACGTGCCCATGCAGGGCGGC 2831 Query 32808 TAATAATTTCCACACCACCCCATTCATCGCTGATGCGGCATTCGTGATAGGTATTCAGAT 32867 ||| |||| || || ||||| | | | |||| ||||| || || | || || || | Sbjct 2832 GGATAGTTTCAACGCCGCCCCAGTGACCACTGAGACGGCAATCATGGAATGTGTTGAGGT 2891 Query 32868 CCCGGCGGAATAACTGGTGTCCGGCGTCAACATCAGGTGCATCAAGTTCGAACACGCGGA 32927 | || | || | | || ||||||| | |||| ||| | ||| || || |||| Sbjct 2892 CGCGAC--AAAAGGTTGTATCCGGCGCTCAGATCATCCTCATGGACTTC-AAAACCCGGA 2948 Query 32928 CCGGGTATCGACCGCAGTCGATGGTTTCGCTGACAGCCAGGAAGAAGAAACCATGCGGTT 32987 | ||||| || |||||||| |||| |||||| || || | ||| | |||| ||||| | Sbjct 2949 CTGGGTAGCGTCCGCAGTCAATGGCTTCGCTTACCGCAATAAAG-ACAAAC--TGCGGAT 3005 Query 32988 GGCCAGT--AACCT-TCAGCGCGCCTTCGCGGTACATGGCGTCCTGGACGTGATAACGGA 33044 || || || | | | |||||| ||||| || |||| ||||| || | || Sbjct 3006 -GCGTGTTAAAGGTGTTATAAAACCTTCGGAATACATAGCTGCCTGAACGTGGTACCTGA 3064 Query 33045 ACTCCTCGATGTGACGTGCGAAGCGATCCATGTC 33078 | |||||||| || || || ||||| |||||| Sbjct 3065 ATTCCTCGATATGGCGAGCAAAGCGGGACATGTC 3098 >seq38246 Length=2704 Score = 230 bits (254), Expect = 6e-56 Identities = 332/464 (72%), Gaps = 7/464 (2%) Strand=Plus/Plus Query 32141 TTCGTCAGGGGTGTAGACACCCATGATGACGTCAGGGCAATGCAGGCGTGACCAGCGCTT 32200 ||||||||| ||||| ||||| | || || |||||||| | ||||| | |||||| || Sbjct 1513 TTCGTCAGGCGTGTACACACCTAAAATCACATCAGGGCAGTAAAGGCGCGCCCAGCGTTT 1572 Query 32201 TGTCGCCAGGTATGCGAGTTGTTGTTTAGGATCACTGGCCCAAAGAGTGGAGTTTCTTAC 32260 || || ||||| || ||||| || ||||| |||||||| | || ||||| | || Sbjct 1573 GGTTGCGAGGTAGGCCAGTTGCTGGCGGGGATCGCTGGCCCACAATGTTGAGTTACGCAC 1632 Query 32261 CTGTGCCTGTGACAGTAGCAATTCCAGGACACGTGGTTTATCTTCACCCTTCATCGTGGC 32320 ||| ||||||||||| | | ||| | || || | | |||| || | ||| || Sbjct 1633 CTGCGCCTGTGACAGCAAAATGGTCAGTTCGCGGGGCT--TTTTCATTTTTGAGCGTCGC 1690 Query 32321 CCATACACGCACTCCACAACCTGCTTCATCTTTTAATGTCCATGCTGGAGCGATGTAGGT 32380 ||| || || ||| ||||| |||||||| | |||| || ||||| || || | Sbjct 1691 CCAGACCTTTACCCCAATGCCTGCCTCATCTTTCAGGCTCCAGGCCGGAGCAATATATTT 1750 Query 32381 ATTACCCTTCTGGGA--TGTTTTCTCTACAAACTTGCCGATCACGTTTTCCCACGGTCCG 32438 || |||| ||| | ||||| ||| |||| ||| || |||||||||||||| || Sbjct 1751 GTTGCCCT--TGGAACTGGTTTTTTCTTCAAATCGGCCAATGACGTTTTCCCACGGGCCA 1808 Query 32439 AACCACTCATAGTTGATACGGTCTTTCGTTGGCGACATCGTGGTGATCACCGCATTTACC 32498 ||||| || ||| | |||||||| || |||||||| || ||||||| || || ||| Sbjct 1809 AACCA-TCGAAGTGAAGGCGGTCTTTTGTCGGCGACATTGTATTGATCACTGCGTTGACC 1867 Query 32499 AACTGGGCCTCATAACCGAGAGTGCCGCTAACGACATGAGTTTTCTGCGCGACTGCGAAT 32558 | || |||||||| || || || ||||| || | ||| |||||||| ||||| ||||| Sbjct 1868 AGTTGAGCCTCATAGCCAAGGGTACCGCTGACAATATGGGTTTTCTGAGCGACGGCGAAC 1927 Query 32559 GGATTCATACCCCACTGAGCAGCCTGCATTGCCACAGCCATGCA 32602 || | | ||||| | || |||||||| | || |||||||| Sbjct 1928 GGGTCAAGGCCCCAGCGCGCGGCCTGCATCACAACTGCCATGCA 1971 >seq44258 Length=764 Score = 156 bits (172), Expect = 1e-33 Identities = 196/266 (74%), Gaps = 5/266 (2%) Strand=Plus/Minus Query 32340 CCTGCTTCATCTTTTAATGTCCATGCTGGAGCGATGTAGGTATTACCCTTCTGGGA-TG- 32397 ||||| |||||||| | |||| || ||||| || || | || ||||| || | || Sbjct 726 CCTGCCTCATCTTTCAGGCTCCAGGCCGGAGCAATATATTTGTTGCCCTT--GGAACTGG 669 Query 32398 -TTTTCTCTACAAACTTGCCGATCACGTTTTCCCACGGTCCGAACCACTCATAGTTGATA 32456 |||| ||| |||| ||| || |||||||||||||| || ||||| || ||| | Sbjct 668 TTTTTTTCTTCAAATCGGCCAATGACGTTTTCCCACGGGCCAAACCAATCGAAGTGAAGG 609 Query 32457 CGGTCTTTCGTTGGCGACATCGTGGTGATCACCGCATTTACCAACTGGGCCTCATAACCG 32516 |||||||| || |||||||| || ||||||| || || |||| || |||||||| || Sbjct 608 CGGTCTTTTGTCGGCGACATTGTATTGATCACTGCGTTGACCAGTTGAGCCTCATAGCCA 549 Query 32517 AGAGTGCCGCTAACGACATGAGTTTTCTGCGCGACTGCGAATGGATTCATACCCCACTGA 32576 || || ||||| || | ||| |||||||| ||||| ||||| || | | ||||| | Sbjct 548 AGGGTACCGCTGACAATATGGGTTTTCTGAGCGACGGCGAACGGGTCAAGGCCCCAGCGT 489 Query 32577 GCAGCCTGCATTGCCACAGCCATGCA 32602 || |||||||| | || |||||||| Sbjct 488 GCGGCCTGCATAACTACTGCCATGCA 463 >seq34674 Length=2745 Score = 149 bits (164), Expect = 2e-31 Identities = 186/254 (73%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 41421 TGGCTAAATCCCCAGCAGAACGCAAAGCCGCGCAGCGCGCGCGGCAGTCCGCCGCCGGTG 41480 || |||||||||| || ||||||||||| | |||||| | | ||| |||| || |||| Sbjct 1727 TGCCTAAATCCCCCGCCGAACGCAAAGCAGAGCAGCGAGACAGACAGGCCGCTGCAGGTG 1786 Query 41481 AGCGCAAGCTTGAACTGGTGCTGGATGCTCAGGAACTGGACATGCTGGCGCGGAACTGCG 41540 | ||| | || | || || |||| |||||||||| ||||||| || ||| ||| Sbjct 1787 TCAGAAAGGTGGAGATTGTTCTTGATGAGCAGGAACTGGCGATGCTGGAGCAGAATTGCA 1846 Query 41541 CCGCCCGGCGCCCTGGGCGTGCGCCGTATGAAATGTCTGAGTACATCGCGATGCTGATTC 41600 || || || || |||||||| || || || || | ||||| ||||| |||| |||| Sbjct 1847 CCTTACGCCGTCCAGGGCGTGCCCCCTACGACCTGGCAGAGTATATCGCTCTGCTTATTC 1906 Query 41601 GCCAGGATGATGCACGCGTTCGTGGGCGTATCAAATCTATCAGCGCTAACCGC---TGCG 41657 ||||||| ||||| || || ||| | || ||||||| || || ||| ||| |||| Sbjct 1907 GCCAGGACGATGCGCGGGTCCGTAGCCGGTTCAAATCGATGAG---TAAGCGCAAGTGCG 1963 Query 41658 GGAAGTGCGGTGAT 41671 | ||||| |||||| Sbjct 1964 GTAAGTGTGGTGAT 1977 >seq82134 Length=394 Score = 131 bits (144), Expect = 4e-26 Identities = 186/251 (74%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 1262 GTGTGGGAGGTTGCCGAGGGTGCGCTGACGGACGAGGACACCGAAATCATCTGGGTG-GC 1320 |||||||| || || || || || |||| ||||| |||| ||||||||| | | Sbjct 380 GTGTGGGAAGTGGCTGAAGGCGCA-TGACAGACGAAAACACGATCATCATCTGGATTCGT 322 Query 1321 GTTCGGTAACCCGACGC-GTAACACCGGGCGTTTCCGCGAGTGCTTCCGCAAATACCGGC 1379 |||||| ||||| || | | ||||| || || |||||||||||||| |||||| | || Sbjct 321 GTTCGGCAACCCCACACAGGAACACAGGCCGATTCCGCGAGTGCTTTCGCAAA-ATCGCA 263 Query 1380 ATCGCTGGA-AGTGCGCGCAGATTGACAGCCGCACCGTTGAGGGCACCAACAAAGAGCAA 1438 ||||||| | ||| ||| || ||||| || || || ||||| ||||| || | Sbjct 262 GGCGCTGGATACAGCG-GCAAATCGACAGTCGGACGGTGCCTGGCACGAACAAGAAGAAG 204 Query 1439 CTGCAAAAGTGGGTGGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTGCGTGTACGC 1498 || | ||||||| ||||||| |||||||||||||| || || |||||||| || ||| Sbjct 203 CTCGACGAGTGGGTTAACGACTATGGCGAAGACAGCGA-TTTGT-AAGGTGCGAGTGCGC 146 Query 1499 GGCATCTTCCC 1509 ||||| || || Sbjct 145 GGCATGTTTCC 135 >seq74443 Length=205 Score = 104 bits (114), Expect = 6e-18 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 32141 TTCGTCAGGGGTGTAGACACCCATGATGACGTCAGGGCAATGCAGGCGTGACCAGCGCTT 32200 ||||||||| ||||| ||||| | || || |||||||| | ||||| | |||||| || Sbjct 161 TTCGTCAGGCGTGTACACACCTAAAATCACATCAGGGCAGTAAAGGCGCGCCCAGCGTTT 102 Query 32201 TGTCGCCAGGTATGCGAGTTGTTGTTTAGGATCACTGGCCCAAAGAGTGGAGTTTCTTAC 32260 || || ||||| || ||||| || ||||| |||||||| | |||||||| | || Sbjct 101 GGTTGCGAGGTAGGCCAGTTGCTGGCGGGGATCGCTGGCCCACAATGTGGAGTTACGCAC 42 Query 32261 CTGTGCCTGTGACAG 32275 ||| ||||||||||| Sbjct 41 CTGAGCCTGTGACAG 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133303817689200